miRNA display CGI


Results 61 - 80 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9045 5' -53.6 NC_002512.2 + 99960 0.68 0.947141
Target:  5'- gGUGCCuGAucGGCCugGCCccGCGGuGGc -3'
miRNA:   3'- -UAUGGcCU--UUGGugCGGuaCGUCuCC- -5'
9045 5' -53.6 NC_002512.2 + 101088 0.7 0.898961
Target:  5'- --cCCGcGGACCACGCCGgagaccCAGAGGg -3'
miRNA:   3'- uauGGCcUUUGGUGCGGUac----GUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 101226 0.66 0.981418
Target:  5'- -cGCCGGGuuCCgGCGCCGgcaguucgagaUGCAGAa- -3'
miRNA:   3'- uaUGGCCUuuGG-UGCGGU-----------ACGUCUcc -5'
9045 5' -53.6 NC_002512.2 + 101437 0.69 0.942727
Target:  5'- -gGCCGGcggcgcGGCgACGCCGagaGCGGGGGg -3'
miRNA:   3'- uaUGGCCu-----UUGgUGCGGUa--CGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 107927 0.67 0.968909
Target:  5'- -gGCgGGGAcCCGgGUCAgcUGCAGGGGc -3'
miRNA:   3'- uaUGgCCUUuGGUgCGGU--ACGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 108530 0.66 0.979284
Target:  5'- -gGCCGGGGACC-CGaCG-GCGGAGa -3'
miRNA:   3'- uaUGGCCUUUGGuGCgGUaCGUCUCc -5'
9045 5' -53.6 NC_002512.2 + 109562 0.69 0.92808
Target:  5'- -gACCGGAucUC-CGCCGUGCAGuagcGGc -3'
miRNA:   3'- uaUGGCCUuuGGuGCGGUACGUCu---CC- -5'
9045 5' -53.6 NC_002512.2 + 109955 0.67 0.976973
Target:  5'- cGUGCgGGGGcgacGCCGCGCUcgagaucuugGUGCAGAacaGGa -3'
miRNA:   3'- -UAUGgCCUU----UGGUGCGG----------UACGUCU---CC- -5'
9045 5' -53.6 NC_002512.2 + 110412 0.66 0.985865
Target:  5'- -cGCCGGA--CCGCGCCuuccacuuccgcccgAUcuagagGCGGAGGa -3'
miRNA:   3'- uaUGGCCUuuGGUGCGG---------------UA------CGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 113134 0.66 0.988343
Target:  5'- --cUCGGAGACCGCGC---GCGGGGc -3'
miRNA:   3'- uauGGCCUUUGGUGCGguaCGUCUCc -5'
9045 5' -53.6 NC_002512.2 + 113163 0.67 0.968909
Target:  5'- -aGCCGG--GCCACGUCggacGUGCcGGGGc -3'
miRNA:   3'- uaUGGCCuuUGGUGCGG----UACGuCUCC- -5'
9045 5' -53.6 NC_002512.2 + 114051 0.66 0.979284
Target:  5'- -gGCaGGGGcCCGCGUCGUGCAGcaccGGGu -3'
miRNA:   3'- uaUGgCCUUuGGUGCGGUACGUC----UCC- -5'
9045 5' -53.6 NC_002512.2 + 114132 0.67 0.968909
Target:  5'- -cACCGGu--CCGaggagcaGCCG-GCAGAGGa -3'
miRNA:   3'- uaUGGCCuuuGGUg------CGGUaCGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 117065 0.66 0.979284
Target:  5'- cGUGCCGG-AGCaCGCGCag-GCgcuGGAGGu -3'
miRNA:   3'- -UAUGGCCuUUG-GUGCGguaCG---UCUCC- -5'
9045 5' -53.6 NC_002512.2 + 117744 0.73 0.779944
Target:  5'- -cGCCGucGACCgccucgucuucGCGCCAUGCgGGAGGg -3'
miRNA:   3'- uaUGGCcuUUGG-----------UGCGGUACG-UCUCC- -5'
9045 5' -53.6 NC_002512.2 + 119165 0.68 0.962524
Target:  5'- -aACaCGGcccuGGCCaACGCCAUGCAGcuGGc -3'
miRNA:   3'- uaUG-GCCu---UUGG-UGCGGUACGUCu-CC- -5'
9045 5' -53.6 NC_002512.2 + 119562 0.66 0.981418
Target:  5'- -gACCGGGcgGACCGCgggaGCCcgGCGGGu- -3'
miRNA:   3'- uaUGGCCU--UUGGUG----CGGuaCGUCUcc -5'
9045 5' -53.6 NC_002512.2 + 120768 0.68 0.962524
Target:  5'- cGUGCUGGAcuCgGCgGCCGUcgGCGGGGGc -3'
miRNA:   3'- -UAUGGCCUuuGgUG-CGGUA--CGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 121053 0.72 0.840747
Target:  5'- -gGCCGGguACC-CGCCGcccgaggcGCGGAGGa -3'
miRNA:   3'- uaUGGCCuuUGGuGCGGUa-------CGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 121129 0.66 0.988343
Target:  5'- -aGCCGGAucgcCCGCGCCGcGCAcugccuccgcGAGa -3'
miRNA:   3'- uaUGGCCUuu--GGUGCGGUaCGU----------CUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.