miRNA display CGI


Results 61 - 80 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9045 5' -53.6 NC_002512.2 + 133796 0.7 0.911311
Target:  5'- -cGgCGGGGACgacgguCGCGCCGggUGCGGGGGg -3'
miRNA:   3'- uaUgGCCUUUG------GUGCGGU--ACGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 131871 0.68 0.951324
Target:  5'- -gGCCGGAGACgGggaGCCGgagggGgAGAGGg -3'
miRNA:   3'- uaUGGCCUUUGgUg--CGGUa----CgUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 130581 0.74 0.742137
Target:  5'- cGUGaaGGAGGCCGCgGCCucggagGCGGAGGa -3'
miRNA:   3'- -UAUggCCUUUGGUG-CGGua----CGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 130503 0.66 0.979284
Target:  5'- -aGCCGGGcuGCgAgGCCGUGCGGuucGGc -3'
miRNA:   3'- uaUGGCCUu-UGgUgCGGUACGUCu--CC- -5'
9045 5' -53.6 NC_002512.2 + 130235 0.68 0.958649
Target:  5'- cUGCCGGGGAUCggcucggGCGCCggGCccuccGAGGg -3'
miRNA:   3'- uAUGGCCUUUGG-------UGCGGuaCGu----CUCC- -5'
9045 5' -53.6 NC_002512.2 + 129833 0.68 0.962524
Target:  5'- -cGCCGcc-GCCcccgcgucucaGCGCCcgGCGGAGGa -3'
miRNA:   3'- uaUGGCcuuUGG-----------UGCGGuaCGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 129734 0.7 0.890442
Target:  5'- cUGCuCGGAAuguCCGCGCCAcgUGCcuccugguccgccuAGAGGa -3'
miRNA:   3'- uAUG-GCCUUu--GGUGCGGU--ACG--------------UCUCC- -5'
9045 5' -53.6 NC_002512.2 + 129018 0.68 0.962524
Target:  5'- -gGCCGGGAggaguucgaACCG-GCCGUGCGGGu- -3'
miRNA:   3'- uaUGGCCUU---------UGGUgCGGUACGUCUcc -5'
9045 5' -53.6 NC_002512.2 + 126983 0.69 0.93808
Target:  5'- -gGCCGucGACCGCGCCAggcgcacgGUGGAGu -3'
miRNA:   3'- uaUGGCcuUUGGUGCGGUa-------CGUCUCc -5'
9045 5' -53.6 NC_002512.2 + 124941 0.67 0.976732
Target:  5'- -gGCCGGc-GCCGCGCCGacGCcggacgaGGAGGc -3'
miRNA:   3'- uaUGGCCuuUGGUGCGGUa-CG-------UCUCC- -5'
9045 5' -53.6 NC_002512.2 + 124426 0.67 0.965822
Target:  5'- cGUGCaCGGGacGACgaACGUCcUGCGGAGGa -3'
miRNA:   3'- -UAUG-GCCU--UUGg-UGCGGuACGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 123137 0.66 0.981418
Target:  5'- -aGCCGGAcGCggaGCGCCGccgggGCcGAGGa -3'
miRNA:   3'- uaUGGCCUuUGg--UGCGGUa----CGuCUCC- -5'
9045 5' -53.6 NC_002512.2 + 122077 0.66 0.985187
Target:  5'- -cAgCGGggGCUGCGaCAUGCGGAa- -3'
miRNA:   3'- uaUgGCCuuUGGUGCgGUACGUCUcc -5'
9045 5' -53.6 NC_002512.2 + 121396 0.79 0.446311
Target:  5'- -gGCCGGAcggAGCCGCGCCuggcGUGGAGGg -3'
miRNA:   3'- uaUGGCCU---UUGGUGCGGua--CGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 121129 0.66 0.988343
Target:  5'- -aGCCGGAucgcCCGCGCCGcGCAcugccuccgcGAGa -3'
miRNA:   3'- uaUGGCCUuu--GGUGCGGUaCGU----------CUCc -5'
9045 5' -53.6 NC_002512.2 + 121053 0.72 0.840747
Target:  5'- -gGCCGGguACC-CGCCGcccgaggcGCGGAGGa -3'
miRNA:   3'- uaUGGCCuuUGGuGCGGUa-------CGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 120768 0.68 0.962524
Target:  5'- cGUGCUGGAcuCgGCgGCCGUcgGCGGGGGc -3'
miRNA:   3'- -UAUGGCCUuuGgUG-CGGUA--CGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 119562 0.66 0.981418
Target:  5'- -gACCGGGcgGACCGCgggaGCCcgGCGGGu- -3'
miRNA:   3'- uaUGGCCU--UUGGUG----CGGuaCGUCUcc -5'
9045 5' -53.6 NC_002512.2 + 119165 0.68 0.962524
Target:  5'- -aACaCGGcccuGGCCaACGCCAUGCAGcuGGc -3'
miRNA:   3'- uaUG-GCCu---UUGG-UGCGGUACGUCu-CC- -5'
9045 5' -53.6 NC_002512.2 + 117744 0.73 0.779944
Target:  5'- -cGCCGucGACCgccucgucuucGCGCCAUGCgGGAGGg -3'
miRNA:   3'- uaUGGCcuUUGG-----------UGCGGUACG-UCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.