miRNA display CGI


Results 61 - 80 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9045 5' -53.6 NC_002512.2 + 81900 0.7 0.885697
Target:  5'- uGUACucgCGGAggUCguGCGCCGUGgAGGGGg -3'
miRNA:   3'- -UAUG---GCCUuuGG--UGCGGUACgUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 99960 0.68 0.947141
Target:  5'- gGUGCCuGAucGGCCugGCCccGCGGuGGc -3'
miRNA:   3'- -UAUGGcCU--UUGGugCGGuaCGUCuCC- -5'
9045 5' -53.6 NC_002512.2 + 14622 0.68 0.947141
Target:  5'- aGUGgCGGAGGCCGCGCUu----GAGGa -3'
miRNA:   3'- -UAUgGCCUUUGGUGCGGuacguCUCC- -5'
9045 5' -53.6 NC_002512.2 + 99916 0.69 0.942727
Target:  5'- -cGCCGGggGCC-CGCCGaaggGCGGcgucGGc -3'
miRNA:   3'- uaUGGCCuuUGGuGCGGUa---CGUCu---CC- -5'
9045 5' -53.6 NC_002512.2 + 126983 0.69 0.93808
Target:  5'- -gGCCGucGACCGCGCCAggcgcacgGUGGAGu -3'
miRNA:   3'- uaUGGCcuUUGGUGCGGUa-------CGUCUCc -5'
9045 5' -53.6 NC_002512.2 + 95922 0.69 0.93664
Target:  5'- -gAUCGGAaaguccuugaccuuGAUCGCGCCcuccgGCGGGGGg -3'
miRNA:   3'- uaUGGCCU--------------UUGGUGCGGua---CGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 30272 0.69 0.933198
Target:  5'- -cGCgCGGAGcCgGCGCCAUGgaGGAGGc -3'
miRNA:   3'- uaUG-GCCUUuGgUGCGGUACg-UCUCC- -5'
9045 5' -53.6 NC_002512.2 + 142038 0.69 0.930156
Target:  5'- -gGCCGGcGACCcgccgcgagggcccgACGCCcgGcCGGGGGa -3'
miRNA:   3'- uaUGGCCuUUGG---------------UGCGGuaC-GUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 109562 0.69 0.92808
Target:  5'- -gACCGGAucUC-CGCCGUGCAGuagcGGc -3'
miRNA:   3'- uaUGGCCUuuGGuGCGGUACGUCu---CC- -5'
9045 5' -53.6 NC_002512.2 + 58337 0.69 0.92808
Target:  5'- -aACUGGuGAgCACGCCGUGCGaacAGGg -3'
miRNA:   3'- uaUGGCCuUUgGUGCGGUACGUc--UCC- -5'
9045 5' -53.6 NC_002512.2 + 34970 0.69 0.92808
Target:  5'- -gACCGGGuccggcugGGCCucGCGUCccGCGGAGGa -3'
miRNA:   3'- uaUGGCCU--------UUGG--UGCGGuaCGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 25943 0.69 0.922727
Target:  5'- -gGCCGGggGCCACgaggGCCucguaguaGCGGAGc -3'
miRNA:   3'- uaUGGCCuuUGGUG----CGGua------CGUCUCc -5'
9045 5' -53.6 NC_002512.2 + 47430 0.69 0.922727
Target:  5'- cUGCCacGAGcACCACGCCcgcacgGCGGAGGc -3'
miRNA:   3'- uAUGGc-CUU-UGGUGCGGua----CGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 133796 0.7 0.911311
Target:  5'- -cGgCGGGGACgacgguCGCGCCGggUGCGGGGGg -3'
miRNA:   3'- uaUgGCCUUUG------GUGCGGU--ACGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 48729 0.7 0.911311
Target:  5'- cUGCUGGAgGACCugGCC--GCGGAGu -3'
miRNA:   3'- uAUGGCCU-UUGGugCGGuaCGUCUCc -5'
9045 5' -53.6 NC_002512.2 + 34887 0.7 0.905252
Target:  5'- -cGCCGGGAccGCCGuCGCCcucuUGCgccgAGAGGa -3'
miRNA:   3'- uaUGGCCUU--UGGU-GCGGu---ACG----UCUCC- -5'
9045 5' -53.6 NC_002512.2 + 78735 0.7 0.905252
Target:  5'- -gGCUGGGagguGACCACGUCA--CGGAGGg -3'
miRNA:   3'- uaUGGCCU----UUGGUGCGGUacGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 142280 0.7 0.892442
Target:  5'- -gGCCGGGGACgGCGUCGa-CGGGGGa -3'
miRNA:   3'- uaUGGCCUUUGgUGCGGUacGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 129734 0.7 0.890442
Target:  5'- cUGCuCGGAAuguCCGCGCCAcgUGCcuccugguccgccuAGAGGa -3'
miRNA:   3'- uAUG-GCCUUu--GGUGCGGU--ACG--------------UCUCC- -5'
9045 5' -53.6 NC_002512.2 + 2074 0.7 0.885697
Target:  5'- -aGCgCGGAGuCCACGCCggGCGGGagcGGg -3'
miRNA:   3'- uaUG-GCCUUuGGUGCGGuaCGUCU---CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.