miRNA display CGI


Results 61 - 80 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9045 5' -53.6 NC_002512.2 + 157797 0.66 0.985187
Target:  5'- -aACCGGGcgguGugCAgGUCGcUGCGGGGGc -3'
miRNA:   3'- uaUGGCCU----UugGUgCGGU-ACGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 117065 0.66 0.979284
Target:  5'- cGUGCCGG-AGCaCGCGCag-GCgcuGGAGGu -3'
miRNA:   3'- -UAUGGCCuUUG-GUGCGguaCG---UCUCC- -5'
9045 5' -53.6 NC_002512.2 + 121053 0.72 0.840747
Target:  5'- -gGCCGGguACC-CGCCGcccgaggcGCGGAGGa -3'
miRNA:   3'- uaUGGCCuuUGGuGCGGUa-------CGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 220318 0.71 0.87873
Target:  5'- -gGCCGGggGCCGgGCUc--CGGGGGg -3'
miRNA:   3'- uaUGGCCuuUGGUgCGGuacGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 206562 0.67 0.971793
Target:  5'- -cGCCGGcgGCCcgggGCGCCAgaacUGCAGGu- -3'
miRNA:   3'- uaUGGCCuuUGG----UGCGGU----ACGUCUcc -5'
9045 5' -53.6 NC_002512.2 + 227910 0.69 0.921074
Target:  5'- -gGCCGGAGAcggacgcgccgccuCCgACGCCGgcggacgagGCGGGGGa -3'
miRNA:   3'- uaUGGCCUUU--------------GG-UGCGGUa--------CGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 139 0.75 0.671653
Target:  5'- -cGCCgGGGAGCCgggcgggGCGCCG-GCGGAGGa -3'
miRNA:   3'- uaUGG-CCUUUGG-------UGCGGUaCGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 124426 0.67 0.965822
Target:  5'- cGUGCaCGGGacGACgaACGUCcUGCGGAGGa -3'
miRNA:   3'- -UAUG-GCCU--UUGg-UGCGGuACGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 108530 0.66 0.979284
Target:  5'- -gGCCGGGGACC-CGaCG-GCGGAGa -3'
miRNA:   3'- uaUGGCCUUUGGuGCgGUaCGUCUCc -5'
9045 5' -53.6 NC_002512.2 + 113134 0.66 0.988343
Target:  5'- --cUCGGAGACCGCGC---GCGGGGc -3'
miRNA:   3'- uauGGCCUUUGGUGCGguaCGUCUCc -5'
9045 5' -53.6 NC_002512.2 + 96516 0.74 0.742137
Target:  5'- -cGCCGGAgggAGCCGCGCCG-GCGGugugagccGGGg -3'
miRNA:   3'- uaUGGCCU---UUGGUGCGGUaCGUC--------UCC- -5'
9045 5' -53.6 NC_002512.2 + 207431 0.7 0.892442
Target:  5'- cUGCaCGGAGAUCugGCCGUaguagcccaGCGGAuGGg -3'
miRNA:   3'- uAUG-GCCUUUGGugCGGUA---------CGUCU-CC- -5'
9045 5' -53.6 NC_002512.2 + 159011 0.66 0.983383
Target:  5'- --cCCGGcguCCGCGCCggGCGGAc- -3'
miRNA:   3'- uauGGCCuuuGGUGCGGuaCGUCUcc -5'
9045 5' -53.6 NC_002512.2 + 135799 0.73 0.779944
Target:  5'- --gUCGGAccGGCCGcCGCCGUcGCGGGGGg -3'
miRNA:   3'- uauGGCCU--UUGGU-GCGGUA-CGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 109955 0.67 0.976973
Target:  5'- cGUGCgGGGGcgacGCCGCGCUcgagaucuugGUGCAGAacaGGa -3'
miRNA:   3'- -UAUGgCCUU----UGGUGCGG----------UACGUCU---CC- -5'
9045 5' -53.6 NC_002512.2 + 133796 0.7 0.911311
Target:  5'- -cGgCGGGGACgacgguCGCGCCGggUGCGGGGGg -3'
miRNA:   3'- uaUgGCCUUUG------GUGCGGU--ACGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 48729 0.7 0.911311
Target:  5'- cUGCUGGAgGACCugGCC--GCGGAGu -3'
miRNA:   3'- uAUGGCCU-UUGGugCGGuaCGUCUCc -5'
9045 5' -53.6 NC_002512.2 + 136211 0.67 0.968909
Target:  5'- -cGCCGGcgGCCugGUgc-GCGGGGGu -3'
miRNA:   3'- uaUGGCCuuUGGugCGguaCGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 46362 0.67 0.976973
Target:  5'- -cGCCGGu--CCGCaGCCAgGC-GAGGa -3'
miRNA:   3'- uaUGGCCuuuGGUG-CGGUaCGuCUCC- -5'
9045 5' -53.6 NC_002512.2 + 56259 0.67 0.976973
Target:  5'- --cCCGGGGuUCGcCGCCGcgGCGGAGGc -3'
miRNA:   3'- uauGGCCUUuGGU-GCGGUa-CGUCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.