miRNA display CGI


Results 81 - 100 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9045 5' -53.6 NC_002512.2 + 120768 0.68 0.962524
Target:  5'- cGUGCUGGAcuCgGCgGCCGUcgGCGGGGGc -3'
miRNA:   3'- -UAUGGCCUuuGgUG-CGGUA--CGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 98931 0.68 0.962524
Target:  5'- -gACCgGGGAGCCAgaGCCGgaUGCAGucGGg -3'
miRNA:   3'- uaUGG-CCUUUGGUg-CGGU--ACGUCu-CC- -5'
9045 5' -53.6 NC_002512.2 + 129018 0.68 0.962524
Target:  5'- -gGCCGGGAggaguucgaACCG-GCCGUGCGGGu- -3'
miRNA:   3'- uaUGGCCUU---------UGGUgCGGUACGUCUcc -5'
9045 5' -53.6 NC_002512.2 + 129833 0.68 0.962524
Target:  5'- -cGCCGcc-GCCcccgcgucucaGCGCCcgGCGGAGGa -3'
miRNA:   3'- uaUGGCcuuUGG-----------UGCGGuaCGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 155806 0.68 0.962524
Target:  5'- cUGCCucgaGGAGGCCGUGuCCGUGCAGAu- -3'
miRNA:   3'- uAUGG----CCUUUGGUGC-GGUACGUCUcc -5'
9045 5' -53.6 NC_002512.2 + 162130 0.68 0.962524
Target:  5'- -cGCCGGAGACgAC-CCcgGCucgcGAGGc -3'
miRNA:   3'- uaUGGCCUUUGgUGcGGuaCGu---CUCC- -5'
9045 5' -53.6 NC_002512.2 + 149521 0.68 0.962524
Target:  5'- -gGCCGGAGcggGCCG-GCCAggaGGAGGa -3'
miRNA:   3'- uaUGGCCUU---UGGUgCGGUacgUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 139260 0.67 0.965822
Target:  5'- -cGCCGGGucgcGCCGC-CCGgcgcGCGGGGGc -3'
miRNA:   3'- uaUGGCCUu---UGGUGcGGUa---CGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 15127 0.67 0.965822
Target:  5'- -cGCCGGAcugcGACggCACGCUGUuccgcGCAGGGGu -3'
miRNA:   3'- uaUGGCCU----UUG--GUGCGGUA-----CGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 194029 0.67 0.965822
Target:  5'- -gACCGGGAGucggcgauCCAgGCCGccuggcUGguGAGGg -3'
miRNA:   3'- uaUGGCCUUU--------GGUgCGGU------ACguCUCC- -5'
9045 5' -53.6 NC_002512.2 + 144569 0.67 0.965822
Target:  5'- -aACCGGcGACCuACGUCGaGCGGcAGGc -3'
miRNA:   3'- uaUGGCCuUUGG-UGCGGUaCGUC-UCC- -5'
9045 5' -53.6 NC_002512.2 + 226586 0.67 0.965822
Target:  5'- -gGCCaGGAGGgCGCgGCCcgGgGGAGGa -3'
miRNA:   3'- uaUGG-CCUUUgGUG-CGGuaCgUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 124426 0.67 0.965822
Target:  5'- cGUGCaCGGGacGACgaACGUCcUGCGGAGGa -3'
miRNA:   3'- -UAUG-GCCU--UUGg-UGCGGuACGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 107927 0.67 0.968909
Target:  5'- -gGCgGGGAcCCGgGUCAgcUGCAGGGGc -3'
miRNA:   3'- uaUGgCCUUuGGUgCGGU--ACGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 113163 0.67 0.968909
Target:  5'- -aGCCGG--GCCACGUCggacGUGCcGGGGc -3'
miRNA:   3'- uaUGGCCuuUGGUGCGG----UACGuCUCC- -5'
9045 5' -53.6 NC_002512.2 + 136211 0.67 0.968909
Target:  5'- -cGCCGGcgGCCugGUgc-GCGGGGGu -3'
miRNA:   3'- uaUGGCCuuUGGugCGguaCGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 114132 0.67 0.968909
Target:  5'- -cACCGGu--CCGaggagcaGCCG-GCAGAGGa -3'
miRNA:   3'- uaUGGCCuuuGGUg------CGGUaCGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 67554 0.67 0.971793
Target:  5'- --gUCGGuGGACaGCGCCAUGCAGAu- -3'
miRNA:   3'- uauGGCC-UUUGgUGCGGUACGUCUcc -5'
9045 5' -53.6 NC_002512.2 + 222425 0.67 0.971793
Target:  5'- -gGCCGGcAGCCGCGCCGcgGCuucccccGGGc -3'
miRNA:   3'- uaUGGCCuUUGGUGCGGUa-CGuc-----UCC- -5'
9045 5' -53.6 NC_002512.2 + 206562 0.67 0.971793
Target:  5'- -cGCCGGcgGCCcgggGCGCCAgaacUGCAGGu- -3'
miRNA:   3'- uaUGGCCuuUGG----UGCGGU----ACGUCUcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.