miRNA display CGI


Results 61 - 80 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9046 3' -55.5 NC_002512.2 + 17026 0.66 0.961404
Target:  5'- gAGgaggGGACGCUcggagGGGACGgaCGGcGCCCg -3'
miRNA:   3'- -UCauaaUCUGCGG-----CCUUGC--GCC-CGGG- -5'
9046 3' -55.5 NC_002512.2 + 131098 0.66 0.961404
Target:  5'- gGGUAccUGGACG-UGGuGCGcCGGGCCa -3'
miRNA:   3'- -UCAUa-AUCUGCgGCCuUGC-GCCCGGg -5'
9046 3' -55.5 NC_002512.2 + 4198 0.66 0.960722
Target:  5'- -----aGGACGCCGGAGaucggugggagcggcCGCGGggagcgggacgucgaGCCCc -3'
miRNA:   3'- ucauaaUCUGCGGCCUU---------------GCGCC---------------CGGG- -5'
9046 3' -55.5 NC_002512.2 + 57283 0.67 0.957912
Target:  5'- cGGUGaUAGACcgggaggucgcaGCCGGucucguacuCGCGGGCgCg -3'
miRNA:   3'- -UCAUaAUCUG------------CGGCCuu-------GCGCCCGgG- -5'
9046 3' -55.5 NC_002512.2 + 150 0.67 0.957912
Target:  5'- cGGgcg-GGGCGCCggcggaGGAGCGCGcGCCg -3'
miRNA:   3'- -UCauaaUCUGCGG------CCUUGCGCcCGGg -5'
9046 3' -55.5 NC_002512.2 + 16093 0.67 0.957912
Target:  5'- aGGUAcaAGACGUucUGaGAGCGagauGGGCCCu -3'
miRNA:   3'- -UCAUaaUCUGCG--GC-CUUGCg---CCCGGG- -5'
9046 3' -55.5 NC_002512.2 + 229553 0.67 0.957912
Target:  5'- cGGgcg-GGGCGCCggcggaGGAGCGCGcGCCg -3'
miRNA:   3'- -UCauaaUCUGCGG------CCUUGCGCcCGGg -5'
9046 3' -55.5 NC_002512.2 + 36757 0.67 0.957912
Target:  5'- -----aGGACGaCCGuGACGuCGGGCCg -3'
miRNA:   3'- ucauaaUCUGC-GGCcUUGC-GCCCGGg -5'
9046 3' -55.5 NC_002512.2 + 149503 0.67 0.957912
Target:  5'- gGGUGgucaaaAGGCcgcgGCCGGA--GCGGGCCg -3'
miRNA:   3'- -UCAUaa----UCUG----CGGCCUugCGCCCGGg -5'
9046 3' -55.5 NC_002512.2 + 15558 0.67 0.957912
Target:  5'- -----aGGAgGCCGGAGuCGUcGGCCUg -3'
miRNA:   3'- ucauaaUCUgCGGCCUU-GCGcCCGGG- -5'
9046 3' -55.5 NC_002512.2 + 72829 0.67 0.954209
Target:  5'- -----cGGACcCCGGGACGCccgccuugccGGGUCCu -3'
miRNA:   3'- ucauaaUCUGcGGCCUUGCG----------CCCGGG- -5'
9046 3' -55.5 NC_002512.2 + 126490 0.67 0.954209
Target:  5'- gAGUucguGGCcCCGGAGCGCGaGcGCCUc -3'
miRNA:   3'- -UCAuaauCUGcGGCCUUGCGC-C-CGGG- -5'
9046 3' -55.5 NC_002512.2 + 227427 0.67 0.954209
Target:  5'- -------cGCGCgCGG-GCGCGGGCCg -3'
miRNA:   3'- ucauaaucUGCG-GCCuUGCGCCCGGg -5'
9046 3' -55.5 NC_002512.2 + 129965 0.67 0.954209
Target:  5'- ------cGACGCCGcccuucgGCGGGCCCc -3'
miRNA:   3'- ucauaauCUGCGGCcuug---CGCCCGGG- -5'
9046 3' -55.5 NC_002512.2 + 38039 0.67 0.954209
Target:  5'- gAGg---GGACGCCGGAGgGgugggaGGGCgCa -3'
miRNA:   3'- -UCauaaUCUGCGGCCUUgCg-----CCCGgG- -5'
9046 3' -55.5 NC_002512.2 + 63267 0.67 0.954209
Target:  5'- ------cGACGuucCCGG-ACGCGGaGCCCu -3'
miRNA:   3'- ucauaauCUGC---GGCCuUGCGCC-CGGG- -5'
9046 3' -55.5 NC_002512.2 + 74686 0.67 0.954209
Target:  5'- -----gGGACGggaggaCGGGGCGCGGuGUCCu -3'
miRNA:   3'- ucauaaUCUGCg-----GCCUUGCGCC-CGGG- -5'
9046 3' -55.5 NC_002512.2 + 8824 0.67 0.954209
Target:  5'- ------cGcCGCCGGAGCuuGGGCCa -3'
miRNA:   3'- ucauaauCuGCGGCCUUGcgCCCGGg -5'
9046 3' -55.5 NC_002512.2 + 131742 0.67 0.954209
Target:  5'- ------cGAcCGCCGGGGCGgGcGGCCg -3'
miRNA:   3'- ucauaauCU-GCGGCCUUGCgC-CCGGg -5'
9046 3' -55.5 NC_002512.2 + 30268 0.67 0.954209
Target:  5'- -----cGGACGCgCGGAGC-CGGcGCCa -3'
miRNA:   3'- ucauaaUCUGCG-GCCUUGcGCC-CGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.