miRNA display CGI


Results 21 - 40 of 174 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9047 3' -58.4 NC_002512.2 + 90063 0.66 0.878308
Target:  5'- --aCUCGCCCAcguCCuuGGAcacccgaccgaGGCCCCCGc -3'
miRNA:   3'- uugGAGUGGGU---GGugCCU-----------UUGGGGGU- -5'
9047 3' -58.4 NC_002512.2 + 97318 0.66 0.871317
Target:  5'- uGGCCgCGCCCGCCggggucgaggGCGGAGaggccgacggcGCCgCCCGc -3'
miRNA:   3'- -UUGGaGUGGGUGG----------UGCCUU-----------UGG-GGGU- -5'
9047 3' -58.4 NC_002512.2 + 197463 0.66 0.871317
Target:  5'- -cCCUCGCCCGCUucgucagcuuCGGGGAgCCCa- -3'
miRNA:   3'- uuGGAGUGGGUGGu---------GCCUUUgGGGgu -5'
9047 3' -58.4 NC_002512.2 + 2682 0.66 0.871317
Target:  5'- cGCCUCcuggUCCGCgCGCGGGAGcgccugccgcuCCCCCGg -3'
miRNA:   3'- uUGGAGu---GGGUG-GUGCCUUU-----------GGGGGU- -5'
9047 3' -58.4 NC_002512.2 + 35986 0.66 0.871317
Target:  5'- cGAUC-CGCCgACCGCGGcGACCCgCu -3'
miRNA:   3'- -UUGGaGUGGgUGGUGCCuUUGGGgGu -5'
9047 3' -58.4 NC_002512.2 + 77083 0.66 0.871317
Target:  5'- cGCC-CGCCguCGCCGCGGA--CCUCCGa -3'
miRNA:   3'- uUGGaGUGG--GUGGUGCCUuuGGGGGU- -5'
9047 3' -58.4 NC_002512.2 + 120410 0.66 0.871317
Target:  5'- uACCUCACCCugcucacccggACCGaagaGGAggUCCCg- -3'
miRNA:   3'- uUGGAGUGGG-----------UGGUg---CCUuuGGGGgu -5'
9047 3' -58.4 NC_002512.2 + 9558 0.66 0.871317
Target:  5'- aGGCCgUCcgGCCC-CC-CGGAGcccgGCCCCCGg -3'
miRNA:   3'- -UUGG-AG--UGGGuGGuGCCUU----UGGGGGU- -5'
9047 3' -58.4 NC_002512.2 + 8285 0.66 0.871317
Target:  5'- -uCCUCGCCguCCACc--GACCCCCc -3'
miRNA:   3'- uuGGAGUGGguGGUGccuUUGGGGGu -5'
9047 3' -58.4 NC_002512.2 + 147916 0.66 0.869181
Target:  5'- cGCCgccacCACCCGCC-CGGGgcucaccgcgcgccGGCCCCUc -3'
miRNA:   3'- uUGGa----GUGGGUGGuGCCU--------------UUGGGGGu -5'
9047 3' -58.4 NC_002512.2 + 126990 0.66 0.868464
Target:  5'- -uCCUCuCCCAgCGCGGGucguacccggguCCCCCGu -3'
miRNA:   3'- uuGGAGuGGGUgGUGCCUuu----------GGGGGU- -5'
9047 3' -58.4 NC_002512.2 + 154818 0.66 0.864126
Target:  5'- cGCCUCGacgucgCCGCC-CGGucuCCCCCGc -3'
miRNA:   3'- uUGGAGUg-----GGUGGuGCCuuuGGGGGU- -5'
9047 3' -58.4 NC_002512.2 + 119657 0.66 0.864126
Target:  5'- gAugCUCcUCC-CCGCGGcgGCCCUCAu -3'
miRNA:   3'- -UugGAGuGGGuGGUGCCuuUGGGGGU- -5'
9047 3' -58.4 NC_002512.2 + 126671 0.66 0.864126
Target:  5'- cGGCgaCGCgagCCGCCuCGGAuACCCCCGc -3'
miRNA:   3'- -UUGgaGUG---GGUGGuGCCUuUGGGGGU- -5'
9047 3' -58.4 NC_002512.2 + 121496 0.66 0.864126
Target:  5'- -cCCcCACCCACCG-GGcucGCCCCCc -3'
miRNA:   3'- uuGGaGUGGGUGGUgCCuu-UGGGGGu -5'
9047 3' -58.4 NC_002512.2 + 2409 0.66 0.864126
Target:  5'- uACCUC-CUCGCgGcCGGccGCCCCCGg -3'
miRNA:   3'- uUGGAGuGGGUGgU-GCCuuUGGGGGU- -5'
9047 3' -58.4 NC_002512.2 + 55461 0.66 0.864126
Target:  5'- cACCgugguaGCCC-CgACGGAGGCCCCg- -3'
miRNA:   3'- uUGGag----UGGGuGgUGCCUUUGGGGgu -5'
9047 3' -58.4 NC_002512.2 + 107908 0.66 0.864126
Target:  5'- -uCCUCucguCCCGCCggcggGCGGGGACCCg-- -3'
miRNA:   3'- uuGGAGu---GGGUGG-----UGCCUUUGGGggu -5'
9047 3' -58.4 NC_002512.2 + 121352 0.66 0.864126
Target:  5'- gGACCUUcUCCGCCGuCGGG--UCCCCGg -3'
miRNA:   3'- -UUGGAGuGGGUGGU-GCCUuuGGGGGU- -5'
9047 3' -58.4 NC_002512.2 + 61758 0.66 0.856739
Target:  5'- cAGCC-C-CUCGCCGCGGccGGGCCCCUc -3'
miRNA:   3'- -UUGGaGuGGGUGGUGCC--UUUGGGGGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.