miRNA display CGI


Results 21 - 40 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9047 5' -59 NC_002512.2 + 139258 0.66 0.913833
Target:  5'- gGCGcCGGGUCgcgCCGCccGGCGcgCGg-- -3'
miRNA:   3'- gCGC-GCCCAGa--GGCG--CUGCuaGCagg -5'
9047 5' -59 NC_002512.2 + 3439 0.66 0.913833
Target:  5'- uCGCGgGgcuGGUCggugaCgGCGACGAagGUCCc -3'
miRNA:   3'- -GCGCgC---CCAGa----GgCGCUGCUagCAGG- -5'
9047 5' -59 NC_002512.2 + 188647 0.66 0.913833
Target:  5'- gGCGCcGG-CggCgGCGGCGGcccgUCGUCCg -3'
miRNA:   3'- gCGCGcCCaGa-GgCGCUGCU----AGCAGG- -5'
9047 5' -59 NC_002512.2 + 75643 0.66 0.913833
Target:  5'- -aCGCGGGcgCU-CGCG-CGcgCGUCCu -3'
miRNA:   3'- gcGCGCCCa-GAgGCGCuGCuaGCAGG- -5'
9047 5' -59 NC_002512.2 + 126771 0.66 0.913833
Target:  5'- gGCGCGGcGg--CgGCGGCGAcgCGUgCCg -3'
miRNA:   3'- gCGCGCC-CagaGgCGCUGCUa-GCA-GG- -5'
9047 5' -59 NC_002512.2 + 1982 0.66 0.913833
Target:  5'- gGCGCGuccGUCUCCGCcuCGGacUCGcCCg -3'
miRNA:   3'- gCGCGCc--CAGAGGCGcuGCU--AGCaGG- -5'
9047 5' -59 NC_002512.2 + 202132 0.66 0.913833
Target:  5'- gGCGCcGGUCUcggccgccgCCGCGGggcgggUGGUCGUUCc -3'
miRNA:   3'- gCGCGcCCAGA---------GGCGCU------GCUAGCAGG- -5'
9047 5' -59 NC_002512.2 + 107951 0.66 0.913833
Target:  5'- uCGcCGCGGGUCcgggaccgCCGCcGCc-UCGUCCc -3'
miRNA:   3'- -GC-GCGCCCAGa-------GGCGcUGcuAGCAGG- -5'
9047 5' -59 NC_002512.2 + 98904 0.66 0.912179
Target:  5'- uCGCcCGaucuccuccuccgaGGUCUcCCGauauaaGGCGGUCGUCCg -3'
miRNA:   3'- -GCGcGC--------------CCAGA-GGCg-----CUGCUAGCAGG- -5'
9047 5' -59 NC_002512.2 + 133180 0.66 0.911624
Target:  5'- cCGCGgGGGUCaaauagucgaaacCCGUuaucuucggGACG-UCGUCCg -3'
miRNA:   3'- -GCGCgCCCAGa------------GGCG---------CUGCuAGCAGG- -5'
9047 5' -59 NC_002512.2 + 16536 0.66 0.908249
Target:  5'- aGCGCGGGcgucccccuggCUCCG-GAUGuacUCGUCg -3'
miRNA:   3'- gCGCGCCCa----------GAGGCgCUGCu--AGCAGg -5'
9047 5' -59 NC_002512.2 + 169192 0.66 0.908249
Target:  5'- aGUGCGGGUCcaccagCGCGAacUGGUaCGUCUc -3'
miRNA:   3'- gCGCGCCCAGag----GCGCU--GCUA-GCAGG- -5'
9047 5' -59 NC_002512.2 + 180030 0.66 0.908249
Target:  5'- aCGCuCGGGaUCUCCGaucccaGGCGGUgCGggugCCg -3'
miRNA:   3'- -GCGcGCCC-AGAGGCg-----CUGCUA-GCa---GG- -5'
9047 5' -59 NC_002512.2 + 213156 0.66 0.908249
Target:  5'- cCGCucaugGCGGGUCagcUCUGCGuggucggcACGAUCGgcuaCCg -3'
miRNA:   3'- -GCG-----CGCCCAG---AGGCGC--------UGCUAGCa---GG- -5'
9047 5' -59 NC_002512.2 + 122400 0.66 0.908249
Target:  5'- cCGCuGCGGGcCggUCGCGGCGAcgagaugaacaUCG-CCa -3'
miRNA:   3'- -GCG-CGCCCaGa-GGCGCUGCU-----------AGCaGG- -5'
9047 5' -59 NC_002512.2 + 16038 0.66 0.908249
Target:  5'- gGCaGCGGGaUCUucuccccgcgCCGCGccuCGAgacucUCGUCCa -3'
miRNA:   3'- gCG-CGCCC-AGA----------GGCGCu--GCU-----AGCAGG- -5'
9047 5' -59 NC_002512.2 + 220771 0.66 0.908249
Target:  5'- cCGaCGuCGGGUCcauggacCUGCuGGgGAUCGUCCu -3'
miRNA:   3'- -GC-GC-GCCCAGa------GGCG-CUgCUAGCAGG- -5'
9047 5' -59 NC_002512.2 + 108435 0.66 0.903048
Target:  5'- gGCGCGGGgcggaccccucagggCUCCGgGgccgacuccGCGggCGUCUc -3'
miRNA:   3'- gCGCGCCCa--------------GAGGCgC---------UGCuaGCAGG- -5'
9047 5' -59 NC_002512.2 + 2695 0.66 0.90246
Target:  5'- gCGCGCGGGagcgccugccgCUCCccCGGCuGcUCGUCCu -3'
miRNA:   3'- -GCGCGCCCa----------GAGGc-GCUG-CuAGCAGG- -5'
9047 5' -59 NC_002512.2 + 96295 0.66 0.90246
Target:  5'- uGcCGCGGGcCgccgCCGCGGgcgggcCGGUCG-CCg -3'
miRNA:   3'- gC-GCGCCCaGa---GGCGCU------GCUAGCaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.