miRNA display CGI


Results 61 - 80 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9049 3' -61 NC_002512.2 + 183455 0.66 0.828539
Target:  5'- gCGgUCGAGaACGuCGGCGcCGCcaccaaggccgugcUGCGGg -3'
miRNA:   3'- -GCgAGCUCcUGC-GCCGCuGCG--------------ACGCC- -5'
9049 3' -61 NC_002512.2 + 181567 0.68 0.709263
Target:  5'- uCGUUCGuGGGguccgucUGCGGCGGCagggGCgGCGGg -3'
miRNA:   3'- -GCGAGCuCCU-------GCGCCGCUG----CGaCGCC- -5'
9049 3' -61 NC_002512.2 + 181409 0.71 0.559472
Target:  5'- cCGC-CGGGGACGCguucaggauGGcCGucaGCUGCGGg -3'
miRNA:   3'- -GCGaGCUCCUGCG---------CC-GCug-CGACGCC- -5'
9049 3' -61 NC_002512.2 + 170815 0.71 0.522613
Target:  5'- aGCgaCGGGGGCggcaGCGGCGGCaGCgGCGGc -3'
miRNA:   3'- gCGa-GCUCCUG----CGCCGCUG-CGaCGCC- -5'
9049 3' -61 NC_002512.2 + 170774 0.68 0.746683
Target:  5'- aGCgCGAcGGGCGCGaucggcGCGACGacgGCGGc -3'
miRNA:   3'- gCGaGCU-CCUGCGC------CGCUGCga-CGCC- -5'
9049 3' -61 NC_002512.2 + 170355 0.67 0.790304
Target:  5'- cCGCgaucagCGuGGccagggccguGCGCGGCGccGCGCUGCa- -3'
miRNA:   3'- -GCGa-----GCuCC----------UGCGCCGC--UGCGACGcc -5'
9049 3' -61 NC_002512.2 + 169062 0.72 0.477939
Target:  5'- gGCgCGAGGGgcucCGCGGCGGCgGCgucGCGGc -3'
miRNA:   3'- gCGaGCUCCU----GCGCCGCUG-CGa--CGCC- -5'
9049 3' -61 NC_002512.2 + 169013 0.66 0.838544
Target:  5'- gGCUCGGcgauccGGGCG-GGCGucCGCgaGCGGc -3'
miRNA:   3'- gCGAGCU------CCUGCgCCGCu-GCGa-CGCC- -5'
9049 3' -61 NC_002512.2 + 168714 0.69 0.679374
Target:  5'- aCGCcgUCGGGGAgcucgugcccuccuUGCaGGCcgugcaGGCGCUGCGGa -3'
miRNA:   3'- -GCG--AGCUCCU--------------GCG-CCG------CUGCGACGCC- -5'
9049 3' -61 NC_002512.2 + 166467 0.77 0.264841
Target:  5'- gGCUCGAGGGCGgGGaCGGCGggaccGCGGg -3'
miRNA:   3'- gCGAGCUCCUGCgCC-GCUGCga---CGCC- -5'
9049 3' -61 NC_002512.2 + 166016 0.69 0.644402
Target:  5'- gGCUcCGGGGACGCguucGGCGGcCGUUcCGGg -3'
miRNA:   3'- gCGA-GCUCCUGCG----CCGCU-GCGAcGCC- -5'
9049 3' -61 NC_002512.2 + 164585 0.71 0.531747
Target:  5'- -aCUCcgggGAGGACGCGGCGGCGaUGCu- -3'
miRNA:   3'- gcGAG----CUCCUGCGCCGCUGCgACGcc -5'
9049 3' -61 NC_002512.2 + 161990 0.67 0.764442
Target:  5'- uCGCUCGuGGACcUGGUG-CGggaUGCGGa -3'
miRNA:   3'- -GCGAGCuCCUGcGCCGCuGCg--ACGCC- -5'
9049 3' -61 NC_002512.2 + 160910 0.71 0.531747
Target:  5'- gGC-CGgggcaaGGGACGCGGacaGuCGCUGCGGc -3'
miRNA:   3'- gCGaGC------UCCUGCGCCg--CuGCGACGCC- -5'
9049 3' -61 NC_002512.2 + 160833 0.68 0.719416
Target:  5'- aGCaggCGGGcGGC-CGGCGGCGCUG-GGc -3'
miRNA:   3'- gCGa--GCUC-CUGcGCCGCUGCGACgCC- -5'
9049 3' -61 NC_002512.2 + 158928 0.66 0.806946
Target:  5'- gGCUucggCGGGGGCGcCGGCGGCcucucggucaGCaacgGCGGc -3'
miRNA:   3'- gCGA----GCUCCUGC-GCCGCUG----------CGa---CGCC- -5'
9049 3' -61 NC_002512.2 + 158287 0.66 0.822252
Target:  5'- aGCUgGAGGGCGUGcCGGCccccaagGCcGCGGu -3'
miRNA:   3'- gCGAgCUCCUGCGCcGCUG-------CGaCGCC- -5'
9049 3' -61 NC_002512.2 + 157265 0.67 0.79869
Target:  5'- cCGg-CGAGGACGUGuucGUGGCGCgcagcaaGCGGg -3'
miRNA:   3'- -GCgaGCUCCUGCGC---CGCUGCGa------CGCC- -5'
9049 3' -61 NC_002512.2 + 157128 0.66 0.806946
Target:  5'- gGCgUCGGGGGuCgGCGGCGGgccCGggGCGGg -3'
miRNA:   3'- gCG-AGCUCCU-G-CGCCGCU---GCgaCGCC- -5'
9049 3' -61 NC_002512.2 + 156486 0.68 0.710189
Target:  5'- gGCUCGGcgggcugggcGGACaCGGCGGCcuggGCgGCGGg -3'
miRNA:   3'- gCGAGCU----------CCUGcGCCGCUG----CGaCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.