miRNA display CGI


Results 81 - 100 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9049 3' -61 NC_002512.2 + 118073 0.71 0.550181
Target:  5'- cCGCg-GAGGGgGCGGCuccGGCGCcgGCGGc -3'
miRNA:   3'- -GCGagCUCCUgCGCCG---CUGCGa-CGCC- -5'
9049 3' -61 NC_002512.2 + 80780 0.71 0.559472
Target:  5'- gGCUCGAGGAggaGCGGCGcgaggaggaggaGCGC-GCGc -3'
miRNA:   3'- gCGAGCUCCUg--CGCCGC------------UGCGaCGCc -5'
9049 3' -61 NC_002512.2 + 133879 0.71 0.559472
Target:  5'- gGCUCGAGGA-GCGGCucgGCcgGCGGu -3'
miRNA:   3'- gCGAGCUCCUgCGCCGcugCGa-CGCC- -5'
9049 3' -61 NC_002512.2 + 24705 0.71 0.559472
Target:  5'- --gUCGAGGACGCGGgcgagggaGACGCgGCGu -3'
miRNA:   3'- gcgAGCUCCUGCGCCg-------CUGCGaCGCc -5'
9049 3' -61 NC_002512.2 + 89576 0.71 0.568807
Target:  5'- aGCUCGccugcggcGGGugGCGG-GAUGUcGCGGg -3'
miRNA:   3'- gCGAGC--------UCCugCGCCgCUGCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 13674 0.71 0.568807
Target:  5'- aGCUCccGGACGaGGCGACGgCcGCGGc -3'
miRNA:   3'- gCGAGcuCCUGCgCCGCUGC-GaCGCC- -5'
9049 3' -61 NC_002512.2 + 131724 0.71 0.568807
Target:  5'- gCGCcCGuccaGACGCGGCGAcCGCcgggGCGGg -3'
miRNA:   3'- -GCGaGCuc--CUGCGCCGCU-GCGa---CGCC- -5'
9049 3' -61 NC_002512.2 + 8371 0.71 0.568807
Target:  5'- gCGC-CGAGGAucCGCGGCGcCGC-GCaGGa -3'
miRNA:   3'- -GCGaGCUCCU--GCGCCGCuGCGaCG-CC- -5'
9049 3' -61 NC_002512.2 + 2824 0.71 0.568807
Target:  5'- gCGCgggcgCGGgcccGGACGaCGGCGGgcaGCUGCGGc -3'
miRNA:   3'- -GCGa----GCU----CCUGC-GCCGCUg--CGACGCC- -5'
9049 3' -61 NC_002512.2 + 123547 0.71 0.567871
Target:  5'- aGCUCGcGGGACGagcgacCGGgGagagccgccgaagGCGCUGCGGg -3'
miRNA:   3'- gCGAGC-UCCUGC------GCCgC-------------UGCGACGCC- -5'
9049 3' -61 NC_002512.2 + 91358 0.71 0.550181
Target:  5'- uGCUCGAcgggcuGGACGaCGcGacccugaaGACGCUGCGGc -3'
miRNA:   3'- gCGAGCU------CCUGC-GC-Cg-------CUGCGACGCC- -5'
9049 3' -61 NC_002512.2 + 215181 0.71 0.55668
Target:  5'- uGCUCGGggagcGGACGCGGgucuaccucuucguCGGCGggGCGGa -3'
miRNA:   3'- gCGAGCU-----CCUGCGCC--------------GCUGCgaCGCC- -5'
9049 3' -61 NC_002512.2 + 91130 0.71 0.540938
Target:  5'- aGUUCGA-GAUGUGGuCGgacGCGCUGCGGc -3'
miRNA:   3'- gCGAGCUcCUGCGCC-GC---UGCGACGCC- -5'
9049 3' -61 NC_002512.2 + 160910 0.71 0.531747
Target:  5'- gGC-CGgggcaaGGGACGCGGacaGuCGCUGCGGc -3'
miRNA:   3'- gCGaGC------UCCUGCGCCg--CuGCGACGCC- -5'
9049 3' -61 NC_002512.2 + 164585 0.71 0.531747
Target:  5'- -aCUCcgggGAGGACGCGGCGGCGaUGCu- -3'
miRNA:   3'- gcGAG----CUCCUGCGCCGCUGCgACGcc -5'
9049 3' -61 NC_002512.2 + 91584 0.71 0.559472
Target:  5'- cCGCUaCGAGcGcGCGCGGCaccacgaGCUGCGGa -3'
miRNA:   3'- -GCGA-GCUC-C-UGCGCCGcug----CGACGCC- -5'
9049 3' -61 NC_002512.2 + 170815 0.71 0.522613
Target:  5'- aGCgaCGGGGGCggcaGCGGCGGCaGCgGCGGc -3'
miRNA:   3'- gCGa-GCUCCUG----CGCCGCUG-CGaCGCC- -5'
9049 3' -61 NC_002512.2 + 132155 0.71 0.530831
Target:  5'- -cCUCGAGGucggugaGCGCGGCGuCGUgaGCGGg -3'
miRNA:   3'- gcGAGCUCC-------UGCGCCGCuGCGa-CGCC- -5'
9049 3' -61 NC_002512.2 + 93276 0.71 0.531747
Target:  5'- aCGCUgGAGGGCGCGGCc-CGCUaccuguacGCGu -3'
miRNA:   3'- -GCGAgCUCCUGCGCCGcuGCGA--------CGCc -5'
9049 3' -61 NC_002512.2 + 181409 0.71 0.559472
Target:  5'- cCGC-CGGGGACGCguucaggauGGcCGucaGCUGCGGg -3'
miRNA:   3'- -GCGaGCUCCUGCG---------CC-GCug-CGACGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.