miRNA display CGI


Results 81 - 100 of 313 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9049 3' -61 NC_002512.2 + 17981 0.67 0.773173
Target:  5'- aCGCUCGAcGACGCGGCa--GCccCGGa -3'
miRNA:   3'- -GCGAGCUcCUGCGCCGcugCGacGCC- -5'
9049 3' -61 NC_002512.2 + 86122 0.67 0.773173
Target:  5'- gCGCggagGAGGuCGCGGaccuggaagcCGACGCcGCGGc -3'
miRNA:   3'- -GCGag--CUCCuGCGCC----------GCUGCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 149415 0.67 0.773173
Target:  5'- gGCcgCGAGGGgacCGCGGCGgGgGCgggcGCGGg -3'
miRNA:   3'- gCGa-GCUCCU---GCGCCGC-UgCGa---CGCC- -5'
9049 3' -61 NC_002512.2 + 153395 0.67 0.772305
Target:  5'- aGCgaCGuGGAgCGCGGCGGCGgUcgaggugGCGGa -3'
miRNA:   3'- gCGa-GCuCCU-GCGCCGCUGCgA-------CGCC- -5'
9049 3' -61 NC_002512.2 + 129151 0.67 0.769693
Target:  5'- uGUUCGcguuccugauccAGGACuaccugacguucaCGGgGACGCUGCGGa -3'
miRNA:   3'- gCGAGC------------UCCUGc------------GCCgCUGCGACGCC- -5'
9049 3' -61 NC_002512.2 + 102283 0.67 0.764442
Target:  5'- gGCUCG-GcGCGCgucgaccgccagGGCGACGUcGCGGa -3'
miRNA:   3'- gCGAGCuCcUGCG------------CCGCUGCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 116168 0.67 0.764442
Target:  5'- aGC-CGcuGGCGCcgGGCGaguuccacGCGCUGCGGg -3'
miRNA:   3'- gCGaGCucCUGCG--CCGC--------UGCGACGCC- -5'
9049 3' -61 NC_002512.2 + 161990 0.67 0.764442
Target:  5'- uCGCUCGuGGACcUGGUG-CGggaUGCGGa -3'
miRNA:   3'- -GCGAGCuCCUGcGCCGCuGCg--ACGCC- -5'
9049 3' -61 NC_002512.2 + 25635 0.67 0.764442
Target:  5'- uGUg-GAGGuuauCGGCGGCGCUGCGa -3'
miRNA:   3'- gCGagCUCCugc-GCCGCUGCGACGCc -5'
9049 3' -61 NC_002512.2 + 103038 0.67 0.764442
Target:  5'- ----aGAGGACGaCGGCGACGaCcGCGa -3'
miRNA:   3'- gcgagCUCCUGC-GCCGCUGC-GaCGCc -5'
9049 3' -61 NC_002512.2 + 17907 0.67 0.764442
Target:  5'- gGCccCGAGGACGaCGGCcGCGUccUGaCGGa -3'
miRNA:   3'- gCGa-GCUCCUGC-GCCGcUGCG--AC-GCC- -5'
9049 3' -61 NC_002512.2 + 66735 0.67 0.764442
Target:  5'- cCGUcaCGaAGGugGCGGUGAgGCUaCGGg -3'
miRNA:   3'- -GCGa-GC-UCCugCGCCGCUgCGAcGCC- -5'
9049 3' -61 NC_002512.2 + 134395 0.67 0.764442
Target:  5'- aCGUcgUGuGGAUGCGGCGGCGguuccggguCUGCGu -3'
miRNA:   3'- -GCGa-GCuCCUGCGCCGCUGC---------GACGCc -5'
9049 3' -61 NC_002512.2 + 90443 0.67 0.764442
Target:  5'- gGCagGaAGGGCgGCGGCcgGGCcaGCUGCGGg -3'
miRNA:   3'- gCGagC-UCCUG-CGCCG--CUG--CGACGCC- -5'
9049 3' -61 NC_002512.2 + 35108 0.67 0.763563
Target:  5'- cCGCUCGGaguucccguGGACGCGGaccaggucccgacUGGCGCccacgGUGGa -3'
miRNA:   3'- -GCGAGCU---------CCUGCGCC-------------GCUGCGa----CGCC- -5'
9049 3' -61 NC_002512.2 + 141355 0.67 0.762683
Target:  5'- uGCUCGAGGgguucacgaacgaccACGUGuCGGCcaugcacccggagcgGCUGCGGa -3'
miRNA:   3'- gCGAGCUCC---------------UGCGCcGCUG---------------CGACGCC- -5'
9049 3' -61 NC_002512.2 + 107507 0.67 0.755609
Target:  5'- aCGCUCu-GGAUGacauCGGCGuagugcucgGCGUUGCGGg -3'
miRNA:   3'- -GCGAGcuCCUGC----GCCGC---------UGCGACGCC- -5'
9049 3' -61 NC_002512.2 + 114022 0.67 0.755609
Target:  5'- cCGCagCGGcaccGGGCGCGGUGgACGUagaggGCGGg -3'
miRNA:   3'- -GCGa-GCU----CCUGCGCCGC-UGCGa----CGCC- -5'
9049 3' -61 NC_002512.2 + 154708 0.67 0.755609
Target:  5'- gGCgUCGAGcGGCGCGacggaaCGGCGUUGCGu -3'
miRNA:   3'- gCG-AGCUC-CUGCGCc-----GCUGCGACGCc -5'
9049 3' -61 NC_002512.2 + 121564 0.67 0.75472
Target:  5'- aCGCUgGAGGACGUguucucguuGGCcgagucgaucuccGACGcCUGCGa -3'
miRNA:   3'- -GCGAgCUCCUGCG---------CCG-------------CUGC-GACGCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.