miRNA display CGI


Results 101 - 120 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9049 3' -61 NC_002512.2 + 86122 0.67 0.773173
Target:  5'- gCGCggagGAGGuCGCGGaccuggaagcCGACGCcGCGGc -3'
miRNA:   3'- -GCGag--CUCCuGCGCC----------GCUGCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 71976 0.68 0.700904
Target:  5'- uCGCagUUGGGGAacaUGCGGuCGugGCaGCGGu -3'
miRNA:   3'- -GCG--AGCUCCU---GCGCC-GCugCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 89747 0.68 0.700904
Target:  5'- uCGUgggaGAGGuuccCGCGGuCGGCGC-GCGGg -3'
miRNA:   3'- -GCGag--CUCCu---GCGCC-GCUGCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 59294 0.68 0.709263
Target:  5'- uGCUCGAcggacucgggucgGGACaCGGCGACGgaggagaaCUGCGa -3'
miRNA:   3'- gCGAGCU-------------CCUGcGCCGCUGC--------GACGCc -5'
9049 3' -61 NC_002512.2 + 4886 0.68 0.710189
Target:  5'- gGCUgGAGGA-GCGGCGACGggaagaggGCGc -3'
miRNA:   3'- gCGAgCUCCUgCGCCGCUGCga------CGCc -5'
9049 3' -61 NC_002512.2 + 17035 0.68 0.710189
Target:  5'- aCGCUCGgagGGGACGgaCGGCGcccGCGCccaaccccgGCGGc -3'
miRNA:   3'- -GCGAGC---UCCUGC--GCCGC---UGCGa--------CGCC- -5'
9049 3' -61 NC_002512.2 + 18690 0.68 0.710189
Target:  5'- aGCUCGugggcggcGGGCaccccgagcaggGCGGCGACGCgcuCGGg -3'
miRNA:   3'- gCGAGCu-------CCUG------------CGCCGCUGCGac-GCC- -5'
9049 3' -61 NC_002512.2 + 45193 0.68 0.710189
Target:  5'- gGuCUCGAccgGGAC-CGGCGGCGCgGaCGGc -3'
miRNA:   3'- gC-GAGCU---CCUGcGCCGCUGCGaC-GCC- -5'
9049 3' -61 NC_002512.2 + 122036 0.68 0.710189
Target:  5'- gCGCUCGcGcACGCccggGGCGGCGUcgGCGGc -3'
miRNA:   3'- -GCGAGCuCcUGCG----CCGCUGCGa-CGCC- -5'
9049 3' -61 NC_002512.2 + 227658 0.68 0.710189
Target:  5'- cCGCaggCGAGacacgaaGCGCggcuGGCGACGCUGCGc -3'
miRNA:   3'- -GCGa--GCUCc------UGCG----CCGCUGCGACGCc -5'
9049 3' -61 NC_002512.2 + 2295 0.68 0.719416
Target:  5'- cCGCUgCGGGuGGCGgGGCucUGCUGCGc -3'
miRNA:   3'- -GCGA-GCUC-CUGCgCCGcuGCGACGCc -5'
9049 3' -61 NC_002512.2 + 123255 0.68 0.728579
Target:  5'- aGCUCGAcGAC-CGGCGcCGCaUGuCGGa -3'
miRNA:   3'- gCGAGCUcCUGcGCCGCuGCG-AC-GCC- -5'
9049 3' -61 NC_002512.2 + 24267 0.68 0.728579
Target:  5'- gGCagGaAGGACgGCGGCGACgGCaucccGCGGg -3'
miRNA:   3'- gCGagC-UCCUG-CGCCGCUG-CGa----CGCC- -5'
9049 3' -61 NC_002512.2 + 28498 0.68 0.728579
Target:  5'- uCGggCGAcuGGACGCGGUGAUccagggggugaGCUGuCGGg -3'
miRNA:   3'- -GCgaGCU--CCUGCGCCGCUG-----------CGAC-GCC- -5'
9049 3' -61 NC_002512.2 + 101749 0.68 0.728579
Target:  5'- ---gCGAGGugGUGGCccgGGCGCUccgucgGCGGg -3'
miRNA:   3'- gcgaGCUCCugCGCCG---CUGCGA------CGCC- -5'
9049 3' -61 NC_002512.2 + 50979 0.68 0.728579
Target:  5'- aCGcCUCGGugacGGACGCGGagcugGACGCguucGUGGa -3'
miRNA:   3'- -GC-GAGCU----CCUGCGCCg----CUGCGa---CGCC- -5'
9049 3' -61 NC_002512.2 + 116697 0.68 0.728579
Target:  5'- cCGCUCGcGGAgCGgaCGGCGACGC--CGGu -3'
miRNA:   3'- -GCGAGCuCCU-GC--GCCGCUGCGacGCC- -5'
9049 3' -61 NC_002512.2 + 81227 0.68 0.746683
Target:  5'- cCGCUgGAucgGGugGCggaaggaguccGGCGGC-CUGCGGu -3'
miRNA:   3'- -GCGAgCU---CCugCG-----------CCGCUGcGACGCC- -5'
9049 3' -61 NC_002512.2 + 88691 0.68 0.746683
Target:  5'- --aUCGcGGACGCGG-GACGUUcgcGCGGa -3'
miRNA:   3'- gcgAGCuCCUGCGCCgCUGCGA---CGCC- -5'
9049 3' -61 NC_002512.2 + 142027 0.68 0.746683
Target:  5'- cCGCggcCGGGGGC-CGGCGAccCGCcGCGa -3'
miRNA:   3'- -GCGa--GCUCCUGcGCCGCU--GCGaCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.