miRNA display CGI


Results 101 - 120 of 313 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9049 3' -61 NC_002512.2 + 160910 0.71 0.531747
Target:  5'- gGC-CGgggcaaGGGACGCGGacaGuCGCUGCGGc -3'
miRNA:   3'- gCGaGC------UCCUGCGCCg--CuGCGACGCC- -5'
9049 3' -61 NC_002512.2 + 181409 0.71 0.559472
Target:  5'- cCGC-CGGGGACGCguucaggauGGcCGucaGCUGCGGg -3'
miRNA:   3'- -GCGaGCUCCUGCG---------CC-GCug-CGACGCC- -5'
9049 3' -61 NC_002512.2 + 164585 0.71 0.531747
Target:  5'- -aCUCcgggGAGGACGCGGCGGCGaUGCu- -3'
miRNA:   3'- gcGAG----CUCCUGCGCCGCUGCgACGcc -5'
9049 3' -61 NC_002512.2 + 202507 0.71 0.550181
Target:  5'- aGUUCGGcggcggaggcGGAgGCGGCGGCGgggGCGGa -3'
miRNA:   3'- gCGAGCU----------CCUgCGCCGCUGCga-CGCC- -5'
9049 3' -61 NC_002512.2 + 91584 0.71 0.559472
Target:  5'- cCGCUaCGAGcGcGCGCGGCaccacgaGCUGCGGa -3'
miRNA:   3'- -GCGA-GCUC-C-UGCGCCGcug----CGACGCC- -5'
9049 3' -61 NC_002512.2 + 215181 0.71 0.55668
Target:  5'- uGCUCGGggagcGGACGCGGgucuaccucuucguCGGCGggGCGGa -3'
miRNA:   3'- gCGAGCU-----CCUGCGCC--------------GCUGCgaCGCC- -5'
9049 3' -61 NC_002512.2 + 140908 0.7 0.587585
Target:  5'- gGgUCGAcGACGgGGaCGACGCgGCGGc -3'
miRNA:   3'- gCgAGCUcCUGCgCC-GCUGCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 79930 0.7 0.606475
Target:  5'- gGCUCGaAGGcCGaGGCGGCGCgGgGGu -3'
miRNA:   3'- gCGAGC-UCCuGCgCCGCUGCGaCgCC- -5'
9049 3' -61 NC_002512.2 + 119364 0.7 0.606475
Target:  5'- cCGCccgCGGGaugguggacGACGCGGCGGCccuGCUGCaGGg -3'
miRNA:   3'- -GCGa--GCUC---------CUGCGCCGCUG---CGACG-CC- -5'
9049 3' -61 NC_002512.2 + 51276 0.7 0.614999
Target:  5'- ---aCGuGGACGCGGCGACcgagucgGCgGCGGc -3'
miRNA:   3'- gcgaGCuCCUGCGCCGCUG-------CGaCGCC- -5'
9049 3' -61 NC_002512.2 + 29013 0.7 0.62543
Target:  5'- aCGUggUGGGcGGCGUGGuCGACGCcaUGCGGc -3'
miRNA:   3'- -GCGa-GCUC-CUGCGCC-GCUGCG--ACGCC- -5'
9049 3' -61 NC_002512.2 + 82031 0.7 0.62543
Target:  5'- gGgUCGGGGucGCGcCGGCGGCGgUcGCGGc -3'
miRNA:   3'- gCgAGCUCC--UGC-GCCGCUGCgA-CGCC- -5'
9049 3' -61 NC_002512.2 + 110027 0.7 0.606475
Target:  5'- aGCaUCGAGGggaaccugaaccAgGCGGCGGCGgUGCGc -3'
miRNA:   3'- gCG-AGCUCC------------UgCGCCGCUGCgACGCc -5'
9049 3' -61 NC_002512.2 + 217597 0.7 0.597019
Target:  5'- cCGcCUCGGGGGuCGuCGGCGACuCggGCGGc -3'
miRNA:   3'- -GC-GAGCUCCU-GC-GCCGCUGcGa-CGCC- -5'
9049 3' -61 NC_002512.2 + 119340 0.7 0.605528
Target:  5'- cCGCgCGGGGGCGgaaacgccggucaCGGCGAcuCGCUcGCGGc -3'
miRNA:   3'- -GCGaGCUCCUGC-------------GCCGCU--GCGA-CGCC- -5'
9049 3' -61 NC_002512.2 + 217105 0.7 0.596074
Target:  5'- gGCagCGGGGGCgccgccgaguccuGCGGCGGCaGCaGCGGg -3'
miRNA:   3'- gCGa-GCUCCUG-------------CGCCGCUG-CGaCGCC- -5'
9049 3' -61 NC_002512.2 + 227228 0.7 0.597019
Target:  5'- gGCggacCGGGaGGCGCGGCGgACGg-GCGGg -3'
miRNA:   3'- gCGa---GCUC-CUGCGCCGC-UGCgaCGCC- -5'
9049 3' -61 NC_002512.2 + 114930 0.7 0.597019
Target:  5'- uGCUgaaCGcGGACGCGGUcaacacGGUGCUGCGGg -3'
miRNA:   3'- gCGA---GCuCCUGCGCCG------CUGCGACGCC- -5'
9049 3' -61 NC_002512.2 + 212392 0.7 0.578179
Target:  5'- uCGagaUCGAGGAgGCGGcCGACGaggacgacggGCGGg -3'
miRNA:   3'- -GCg--AGCUCCUgCGCC-GCUGCga--------CGCC- -5'
9049 3' -61 NC_002512.2 + 227185 0.7 0.596074
Target:  5'- aGC-CGGGGGaGCGGCaGGCGCUcccgcgcGCGGa -3'
miRNA:   3'- gCGaGCUCCUgCGCCG-CUGCGA-------CGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.