miRNA display CGI


Results 101 - 120 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9049 3' -61 NC_002512.2 + 89576 0.71 0.568807
Target:  5'- aGCUCGccugcggcGGGugGCGG-GAUGUcGCGGg -3'
miRNA:   3'- gCGAGC--------UCCugCGCCgCUGCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 13674 0.71 0.568807
Target:  5'- aGCUCccGGACGaGGCGACGgCcGCGGc -3'
miRNA:   3'- gCGAGcuCCUGCgCCGCUGC-GaCGCC- -5'
9049 3' -61 NC_002512.2 + 131724 0.71 0.568807
Target:  5'- gCGCcCGuccaGACGCGGCGAcCGCcgggGCGGg -3'
miRNA:   3'- -GCGaGCuc--CUGCGCCGCU-GCGa---CGCC- -5'
9049 3' -61 NC_002512.2 + 8371 0.71 0.568807
Target:  5'- gCGC-CGAGGAucCGCGGCGcCGC-GCaGGa -3'
miRNA:   3'- -GCGaGCUCCU--GCGCCGCuGCGaCG-CC- -5'
9049 3' -61 NC_002512.2 + 2824 0.71 0.568807
Target:  5'- gCGCgggcgCGGgcccGGACGaCGGCGGgcaGCUGCGGc -3'
miRNA:   3'- -GCGa----GCU----CCUGC-GCCGCUg--CGACGCC- -5'
9049 3' -61 NC_002512.2 + 129640 0.71 0.568807
Target:  5'- cCGCUcucCGAGGACGCGGUcgccgcccgucGACGCcGCc- -3'
miRNA:   3'- -GCGA---GCUCCUGCGCCG-----------CUGCGaCGcc -5'
9049 3' -61 NC_002512.2 + 212392 0.7 0.578179
Target:  5'- uCGagaUCGAGGAgGCGGcCGACGaggacgacggGCGGg -3'
miRNA:   3'- -GCg--AGCUCCUgCGCC-GCUGCga--------CGCC- -5'
9049 3' -61 NC_002512.2 + 140908 0.7 0.587585
Target:  5'- gGgUCGAcGACGgGGaCGACGCgGCGGc -3'
miRNA:   3'- gCgAGCUcCUGCgCC-GCUGCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 217105 0.7 0.596074
Target:  5'- gGCagCGGGGGCgccgccgaguccuGCGGCGGCaGCaGCGGg -3'
miRNA:   3'- gCGa-GCUCCUG-------------CGCCGCUG-CGaCGCC- -5'
9049 3' -61 NC_002512.2 + 227185 0.7 0.596074
Target:  5'- aGC-CGGGGGaGCGGCaGGCGCUcccgcgcGCGGa -3'
miRNA:   3'- gCGaGCUCCUgCGCCG-CUGCGA-------CGCC- -5'
9049 3' -61 NC_002512.2 + 209633 0.7 0.597019
Target:  5'- cCGgaCGAGGACGa--CGACGgCUGCGGc -3'
miRNA:   3'- -GCgaGCUCCUGCgccGCUGC-GACGCC- -5'
9049 3' -61 NC_002512.2 + 114930 0.7 0.597019
Target:  5'- uGCUgaaCGcGGACGCGGUcaacacGGUGCUGCGGg -3'
miRNA:   3'- gCGA---GCuCCUGCGCCG------CUGCGACGCC- -5'
9049 3' -61 NC_002512.2 + 227228 0.7 0.597019
Target:  5'- gGCggacCGGGaGGCGCGGCGgACGg-GCGGg -3'
miRNA:   3'- gCGa---GCUC-CUGCGCCGC-UGCgaCGCC- -5'
9049 3' -61 NC_002512.2 + 217597 0.7 0.597019
Target:  5'- cCGcCUCGGGGGuCGuCGGCGACuCggGCGGc -3'
miRNA:   3'- -GC-GAGCUCCU-GC-GCCGCUGcGa-CGCC- -5'
9049 3' -61 NC_002512.2 + 119340 0.7 0.605528
Target:  5'- cCGCgCGGGGGCGgaaacgccggucaCGGCGAcuCGCUcGCGGc -3'
miRNA:   3'- -GCGaGCUCCUGC-------------GCCGCU--GCGA-CGCC- -5'
9049 3' -61 NC_002512.2 + 79930 0.7 0.606475
Target:  5'- gGCUCGaAGGcCGaGGCGGCGCgGgGGu -3'
miRNA:   3'- gCGAGC-UCCuGCgCCGCUGCGaCgCC- -5'
9049 3' -61 NC_002512.2 + 119364 0.7 0.606475
Target:  5'- cCGCccgCGGGaugguggacGACGCGGCGGCccuGCUGCaGGg -3'
miRNA:   3'- -GCGa--GCUC---------CUGCGCCGCUG---CGACG-CC- -5'
9049 3' -61 NC_002512.2 + 110027 0.7 0.606475
Target:  5'- aGCaUCGAGGggaaccugaaccAgGCGGCGGCGgUGCGc -3'
miRNA:   3'- gCG-AGCUCC------------UgCGCCGCUGCgACGCc -5'
9049 3' -61 NC_002512.2 + 184982 0.7 0.606475
Target:  5'- gCGCggcCGucGACGUGGa-GCGCUGCGGc -3'
miRNA:   3'- -GCGa--GCucCUGCGCCgcUGCGACGCC- -5'
9049 3' -61 NC_002512.2 + 51276 0.7 0.614999
Target:  5'- ---aCGuGGACGCGGCGACcgagucgGCgGCGGc -3'
miRNA:   3'- gcgaGCuCCUGCGCCGCUG-------CGaCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.