miRNA display CGI


Results 101 - 120 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9049 3' -61 NC_002512.2 + 166016 0.69 0.644402
Target:  5'- gGCUcCGGGGACGCguucGGCGGcCGUUcCGGg -3'
miRNA:   3'- gCGA-GCUCCUGCG----CCGCU-GCGAcGCC- -5'
9049 3' -61 NC_002512.2 + 207582 0.69 0.660505
Target:  5'- gCGCUCcccucucccuggccuGcGACgGCGGCGGCuGCUGCGGc -3'
miRNA:   3'- -GCGAGcu-------------C-CUG-CGCCGCUG-CGACGCC- -5'
9049 3' -61 NC_002512.2 + 206435 0.69 0.682194
Target:  5'- uGCguagCGAcGGCGCGGUGAaguaguCGCUGCGc -3'
miRNA:   3'- gCGa---GCUcCUGCGCCGCU------GCGACGCc -5'
9049 3' -61 NC_002512.2 + 184982 0.7 0.606475
Target:  5'- gCGCggcCGucGACGUGGa-GCGCUGCGGc -3'
miRNA:   3'- -GCGa--GCucCUGCGCCgcUGCGACGCC- -5'
9049 3' -61 NC_002512.2 + 114930 0.7 0.597019
Target:  5'- uGCUgaaCGcGGACGCGGUcaacacGGUGCUGCGGg -3'
miRNA:   3'- gCGA---GCuCCUGCGCCG------CUGCGACGCC- -5'
9049 3' -61 NC_002512.2 + 217597 0.7 0.597019
Target:  5'- cCGcCUCGGGGGuCGuCGGCGACuCggGCGGc -3'
miRNA:   3'- -GC-GAGCUCCU-GC-GCCGCUGcGa-CGCC- -5'
9049 3' -61 NC_002512.2 + 155624 0.7 0.615947
Target:  5'- gCGCcugugCGAGGAgaGcCGGCGGCGCUuCGGc -3'
miRNA:   3'- -GCGa----GCUCCUg-C-GCCGCUGCGAcGCC- -5'
9049 3' -61 NC_002512.2 + 219564 0.69 0.682194
Target:  5'- uCGC-CGGGGACGUGuGCGACgGCUccuacguccugGUGGc -3'
miRNA:   3'- -GCGaGCUCCUGCGC-CGCUG-CGA-----------CGCC- -5'
9049 3' -61 NC_002512.2 + 219686 0.68 0.719416
Target:  5'- cCGCcCGAGGACGaggaggagcguCGGCGcucgggGCGCgagagGCGGc -3'
miRNA:   3'- -GCGaGCUCCUGC-----------GCCGC------UGCGa----CGCC- -5'
9049 3' -61 NC_002512.2 + 197839 0.71 0.563201
Target:  5'- uGCaUCGAGGG-GCGGCGGgaggcccucuucaacCGaCUGCGGg -3'
miRNA:   3'- gCG-AGCUCCUgCGCCGCU---------------GC-GACGCC- -5'
9049 3' -61 NC_002512.2 + 227185 0.7 0.596074
Target:  5'- aGC-CGGGGGaGCGGCaGGCGCUcccgcgcGCGGa -3'
miRNA:   3'- gCGaGCUCCUgCGCCG-CUGCGA-------CGCC- -5'
9049 3' -61 NC_002512.2 + 91358 0.71 0.550181
Target:  5'- uGCUCGAcgggcuGGACGaCGcGacccugaaGACGCUGCGGc -3'
miRNA:   3'- gCGAGCU------CCUGC-GC-Cg-------CUGCGACGCC- -5'
9049 3' -61 NC_002512.2 + 127093 0.71 0.531747
Target:  5'- aGCg-GAGGGCgGCGGCGGCG--GCGGg -3'
miRNA:   3'- gCGagCUCCUG-CGCCGCUGCgaCGCC- -5'
9049 3' -61 NC_002512.2 + 164585 0.71 0.531747
Target:  5'- -aCUCcgggGAGGACGCGGCGGCGaUGCu- -3'
miRNA:   3'- gcGAG----CUCCUGCGCCGCUGCgACGcc -5'
9049 3' -61 NC_002512.2 + 215181 0.71 0.55668
Target:  5'- uGCUCGGggagcGGACGCGGgucuaccucuucguCGGCGggGCGGa -3'
miRNA:   3'- gCGAGCU-----CCUGCGCC--------------GCUGCgaCGCC- -5'
9049 3' -61 NC_002512.2 + 217105 0.7 0.596074
Target:  5'- gGCagCGGGGGCgccgccgaguccuGCGGCGGCaGCaGCGGg -3'
miRNA:   3'- gCGa-GCUCCUG-------------CGCCGCUG-CGaCGCC- -5'
9049 3' -61 NC_002512.2 + 132155 0.71 0.530831
Target:  5'- -cCUCGAGGucggugaGCGCGGCGuCGUgaGCGGg -3'
miRNA:   3'- gcGAGCUCC-------UGCGCCGCuGCGa-CGCC- -5'
9049 3' -61 NC_002512.2 + 93276 0.71 0.531747
Target:  5'- aCGCUgGAGGGCGCGGCc-CGCUaccuguacGCGu -3'
miRNA:   3'- -GCGAgCUCCUGCGCCGcuGCGA--------CGCc -5'
9049 3' -61 NC_002512.2 + 227228 0.7 0.597019
Target:  5'- gGCggacCGGGaGGCGCGGCGgACGg-GCGGg -3'
miRNA:   3'- gCGa---GCUC-CUGCGCCGC-UGCgaCGCC- -5'
9049 3' -61 NC_002512.2 + 213639 0.68 0.725837
Target:  5'- cCGC-CGcGGGCGaCGGCGACGacgacgaugacggagGCGGa -3'
miRNA:   3'- -GCGaGCuCCUGC-GCCGCUGCga-------------CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.