miRNA display CGI


Results 21 - 40 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9049 5' -52.3 NC_002512.2 + 54719 0.66 0.992098
Target:  5'- cCGCCGUacGACaucucggACCUGAaggccuucugcgUGGACACCa- -3'
miRNA:   3'- -GCGGCG--UUGa------UGGACU------------ACUUGUGGag -5'
9049 5' -52.3 NC_002512.2 + 146733 0.66 0.992098
Target:  5'- gGCCGCGGCcGCCgGGcccGACgACCUCg -3'
miRNA:   3'- gCGGCGUUGaUGGaCUac-UUG-UGGAG- -5'
9049 5' -52.3 NC_002512.2 + 123683 0.66 0.992098
Target:  5'- gGCCGCGG--ACCgGAUGAuCGCCa- -3'
miRNA:   3'- gCGGCGUUgaUGGaCUACUuGUGGag -5'
9049 5' -52.3 NC_002512.2 + 36814 0.66 0.991882
Target:  5'- uCGCCGCAGCacaucuccgUGCCguuggggaacugGggGGACACgUCg -3'
miRNA:   3'- -GCGGCGUUG---------AUGGa-----------CuaCUUGUGgAG- -5'
9049 5' -52.3 NC_002512.2 + 133761 0.66 0.990972
Target:  5'- uGCCGCGG-UGCCUGuucGACACC-Ca -3'
miRNA:   3'- gCGGCGUUgAUGGACuacUUGUGGaG- -5'
9049 5' -52.3 NC_002512.2 + 96979 0.66 0.990972
Target:  5'- aCGCCGC----ACCUGuaccUGGACGCCa- -3'
miRNA:   3'- -GCGGCGuugaUGGACu---ACUUGUGGag -5'
9049 5' -52.3 NC_002512.2 + 41336 0.66 0.990972
Target:  5'- cCGCCGgAGCUgcccgaguugGCCUGGUaguuggaguugaGGACGCCg- -3'
miRNA:   3'- -GCGGCgUUGA----------UGGACUA------------CUUGUGGag -5'
9049 5' -52.3 NC_002512.2 + 122687 0.66 0.990972
Target:  5'- gGCCGCGGCccGgCUGGUGcccguGCACgUCg -3'
miRNA:   3'- gCGGCGUUGa-UgGACUACu----UGUGgAG- -5'
9049 5' -52.3 NC_002512.2 + 24502 0.66 0.990972
Target:  5'- gCGCCGCcGCcuuCCUGGgccUGAcCGCCUUc -3'
miRNA:   3'- -GCGGCGuUGau-GGACU---ACUuGUGGAG- -5'
9049 5' -52.3 NC_002512.2 + 137941 0.66 0.990972
Target:  5'- aGCgGaucacCUGCCUGcgGAACAgCUCg -3'
miRNA:   3'- gCGgCguu--GAUGGACuaCUUGUgGAG- -5'
9049 5' -52.3 NC_002512.2 + 30782 0.67 0.989722
Target:  5'- uGCUGCAgagggugaACguggACCUGgcGGcCACCUCg -3'
miRNA:   3'- gCGGCGU--------UGa---UGGACuaCUuGUGGAG- -5'
9049 5' -52.3 NC_002512.2 + 61357 0.67 0.989722
Target:  5'- aCGCCGUuccuCUACCUG--GAACACgaCa -3'
miRNA:   3'- -GCGGCGuu--GAUGGACuaCUUGUGgaG- -5'
9049 5' -52.3 NC_002512.2 + 196839 0.67 0.989722
Target:  5'- gGCUGCGGCg----GAUGGACGCCg- -3'
miRNA:   3'- gCGGCGUUGauggaCUACUUGUGGag -5'
9049 5' -52.3 NC_002512.2 + 228119 0.67 0.989722
Target:  5'- gGCCGCAACguCgUGcUGGGCGCCg- -3'
miRNA:   3'- gCGGCGUUGauGgACuACUUGUGGag -5'
9049 5' -52.3 NC_002512.2 + 135579 0.67 0.989722
Target:  5'- gCGCCGgGGCgcaACCgGGUGGACgACCg- -3'
miRNA:   3'- -GCGGCgUUGa--UGGaCUACUUG-UGGag -5'
9049 5' -52.3 NC_002512.2 + 41123 0.67 0.989722
Target:  5'- cCGCCGgAACcGCCcu-UGGACACCa- -3'
miRNA:   3'- -GCGGCgUUGaUGGacuACUUGUGGag -5'
9049 5' -52.3 NC_002512.2 + 72133 0.67 0.989722
Target:  5'- gCGaCCGCAcggacaucuuGCagGCCuUGAUGGACGCCg- -3'
miRNA:   3'- -GC-GGCGU----------UGa-UGG-ACUACUUGUGGag -5'
9049 5' -52.3 NC_002512.2 + 58095 0.67 0.988341
Target:  5'- gCGCCGUcGggACgaGGUGAGcCACCUCc -3'
miRNA:   3'- -GCGGCGuUgaUGgaCUACUU-GUGGAG- -5'
9049 5' -52.3 NC_002512.2 + 45438 0.67 0.988341
Target:  5'- cCGCgGCGACUcCCUGuccGACGCCg- -3'
miRNA:   3'- -GCGgCGUUGAuGGACuacUUGUGGag -5'
9049 5' -52.3 NC_002512.2 + 84799 0.67 0.988341
Target:  5'- aGCCGCGAC-GCCUcGcgGAACuCgUCg -3'
miRNA:   3'- gCGGCGUUGaUGGA-CuaCUUGuGgAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.