miRNA display CGI


Results 21 - 40 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9051 3' -54.9 NC_002512.2 + 95267 0.67 0.962778
Target:  5'- --gCGCGGCUccugaACGgCGGGGUCGGGUu -3'
miRNA:   3'- aagGCGUUGA-----UGCaGCUCCAGCUCGc -5'
9051 3' -54.9 NC_002512.2 + 62717 0.67 0.962443
Target:  5'- --gCGCAGC-GCGUCGcGGUCGAcggccucGCGg -3'
miRNA:   3'- aagGCGUUGaUGCAGCuCCAGCU-------CGC- -5'
9051 3' -54.9 NC_002512.2 + 223762 0.67 0.959331
Target:  5'- gUCCGaCGACa--G-CGAGGUCGAGgGa -3'
miRNA:   3'- aAGGC-GUUGaugCaGCUCCAGCUCgC- -5'
9051 3' -54.9 NC_002512.2 + 219312 0.67 0.959331
Target:  5'- gUCCGCGGCcACGgggaGAGcGUCG-GCGu -3'
miRNA:   3'- aAGGCGUUGaUGCag--CUC-CAGCuCGC- -5'
9051 3' -54.9 NC_002512.2 + 116322 0.67 0.959331
Target:  5'- -cCCGCGACUuCuUCGAGGUCGucuucGCc -3'
miRNA:   3'- aaGGCGUUGAuGcAGCUCCAGCu----CGc -5'
9051 3' -54.9 NC_002512.2 + 12114 0.67 0.959331
Target:  5'- -gCCGCGACcccgGCGaCGGGGaCGGGCc -3'
miRNA:   3'- aaGGCGUUGa---UGCaGCUCCaGCUCGc -5'
9051 3' -54.9 NC_002512.2 + 157108 0.67 0.955671
Target:  5'- gUCCcgGCGACgucccucccgGCGUCgGGGGUCG-GCGg -3'
miRNA:   3'- aAGG--CGUUGa---------UGCAG-CUCCAGCuCGC- -5'
9051 3' -54.9 NC_002512.2 + 217890 0.67 0.955671
Target:  5'- aUCgGCGGCcGCGUCG---UCGAGCGg -3'
miRNA:   3'- aAGgCGUUGaUGCAGCuccAGCUCGC- -5'
9051 3' -54.9 NC_002512.2 + 39369 0.67 0.955671
Target:  5'- -cCCGacCAGCU-CGUCGAGGgagugccggcacUCGAGCa -3'
miRNA:   3'- aaGGC--GUUGAuGCAGCUCC------------AGCUCGc -5'
9051 3' -54.9 NC_002512.2 + 150656 0.67 0.955671
Target:  5'- cUgCGCAGCUcgaGCcUCGAGGUccgCGGGCGc -3'
miRNA:   3'- aAgGCGUUGA---UGcAGCUCCA---GCUCGC- -5'
9051 3' -54.9 NC_002512.2 + 204873 0.67 0.955671
Target:  5'- gUCCGCGACcgACGgCGAgcucucggacGG-CGAGCGg -3'
miRNA:   3'- aAGGCGUUGa-UGCaGCU----------CCaGCUCGC- -5'
9051 3' -54.9 NC_002512.2 + 189257 0.67 0.955293
Target:  5'- -aCCGUcggggagAGgUACGUCGAGGUCcGGCc -3'
miRNA:   3'- aaGGCG-------UUgAUGCAGCUCCAGcUCGc -5'
9051 3' -54.9 NC_002512.2 + 227605 0.67 0.954146
Target:  5'- -cCCGCAGCggccggagggcggGCGgcggcggCGAGGUCaGGCGa -3'
miRNA:   3'- aaGGCGUUGa------------UGCa------GCUCCAGcUCGC- -5'
9051 3' -54.9 NC_002512.2 + 138327 0.67 0.951793
Target:  5'- aUCCGCGAgaGCGgCGuGGUC-AGCGc -3'
miRNA:   3'- aAGGCGUUgaUGCaGCuCCAGcUCGC- -5'
9051 3' -54.9 NC_002512.2 + 170550 0.67 0.951793
Target:  5'- -gCUGCAGCUccGCGUCcAGGUCGcAGUu -3'
miRNA:   3'- aaGGCGUUGA--UGCAGcUCCAGC-UCGc -5'
9051 3' -54.9 NC_002512.2 + 132743 0.67 0.951793
Target:  5'- --gCGCAGCgcgGCGUCGucccgcAGG-CGGGCGa -3'
miRNA:   3'- aagGCGUUGa--UGCAGC------UCCaGCUCGC- -5'
9051 3' -54.9 NC_002512.2 + 154687 0.67 0.951793
Target:  5'- gUCCGCuccgAGCggcCGUCcGGcGUCGAGCGg -3'
miRNA:   3'- aAGGCG----UUGau-GCAGcUC-CAGCUCGC- -5'
9051 3' -54.9 NC_002512.2 + 122087 0.67 0.947694
Target:  5'- -gCCGCAcGCgccggACG-CGAGGUCG-GCGc -3'
miRNA:   3'- aaGGCGU-UGa----UGCaGCUCCAGCuCGC- -5'
9051 3' -54.9 NC_002512.2 + 218844 0.67 0.947694
Target:  5'- cUCUGCGACUucgcCGaCGAGGUCGcccggGGCa -3'
miRNA:   3'- aAGGCGUUGAu---GCaGCUCCAGC-----UCGc -5'
9051 3' -54.9 NC_002512.2 + 88434 0.67 0.943371
Target:  5'- cUCCGCGAUaacggACGUCGGac-CGAGCGg -3'
miRNA:   3'- aAGGCGUUGa----UGCAGCUccaGCUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.