miRNA display CGI


Results 21 - 40 of 327 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9051 5' -63.8 NC_002512.2 + 113719 0.66 0.69228
Target:  5'- --gGuCCCGACGCgGGCgGCGAucugcGGGCc -3'
miRNA:   3'- cggC-GGGCUGCGgCCGaUGCU-----CCCGa -5'
9051 5' -63.8 NC_002512.2 + 112911 0.66 0.69228
Target:  5'- cCCGCCCGgacgggGCGUCGGCggccCGGuGGCg -3'
miRNA:   3'- cGGCGGGC------UGCGGCCGau--GCUcCCGa -5'
9051 5' -63.8 NC_002512.2 + 182064 0.66 0.69228
Target:  5'- aGCCGCgCCGACcucaGCCgcGGCUcCGGggucuGGGCg -3'
miRNA:   3'- -CGGCG-GGCUG----CGG--CCGAuGCU-----CCCGa -5'
9051 5' -63.8 NC_002512.2 + 99636 0.66 0.691351
Target:  5'- cGCCcucggaggGCCCGGCGCCcgagccgauccccGGCaGCucGGGCg -3'
miRNA:   3'- -CGG--------CGGGCUGCGG-------------CCGaUGcuCCCGa -5'
9051 5' -63.8 NC_002512.2 + 197986 0.66 0.691351
Target:  5'- aCCGCCCcucucgucuucgcGA-GCgGGCgacggACGGGGGCg -3'
miRNA:   3'- cGGCGGG-------------CUgCGgCCGa----UGCUCCCGa -5'
9051 5' -63.8 NC_002512.2 + 213758 0.66 0.689493
Target:  5'- gGCCGCCCGGCaGaugaucgcggucaaCCGGCUGCuGAcgcuGGGaCg -3'
miRNA:   3'- -CGGCGGGCUG-C--------------GGCCGAUG-CU----CCC-Ga -5'
9051 5' -63.8 NC_002512.2 + 203713 0.66 0.682976
Target:  5'- gGUCGCCC---GCCGGcCUGCGAcacggagacacgGGGCg -3'
miRNA:   3'- -CGGCGGGcugCGGCC-GAUGCU------------CCCGa -5'
9051 5' -63.8 NC_002512.2 + 158080 0.66 0.682976
Target:  5'- cGCCGCCCGAcugcauCGCCaaCUACGuGGaGUa -3'
miRNA:   3'- -CGGCGGGCU------GCGGccGAUGCuCC-CGa -5'
9051 5' -63.8 NC_002512.2 + 194049 0.66 0.682976
Target:  5'- gGCCGCCUG--GCUGGU---GAGGGCg -3'
miRNA:   3'- -CGGCGGGCugCGGCCGaugCUCCCGa -5'
9051 5' -63.8 NC_002512.2 + 157148 0.66 0.682976
Target:  5'- --gGCCCGGgGCgGGCgGCGGgccGGGCg -3'
miRNA:   3'- cggCGGGCUgCGgCCGaUGCU---CCCGa -5'
9051 5' -63.8 NC_002512.2 + 220518 0.66 0.682976
Target:  5'- cGUCGCCCGGgaccuggaggaGCU-GCUgcGCGAGGGCg -3'
miRNA:   3'- -CGGCGGGCUg----------CGGcCGA--UGCUCCCGa -5'
9051 5' -63.8 NC_002512.2 + 11433 0.66 0.682976
Target:  5'- cGCgGUCCgcgggGACGCC-GCggACGGGGGCc -3'
miRNA:   3'- -CGgCGGG-----CUGCGGcCGa-UGCUCCCGa -5'
9051 5' -63.8 NC_002512.2 + 30629 0.66 0.677375
Target:  5'- gGCCGCCCGACauCCagagacucgacaucgGGCUGCGccggaucuaccGGGCg -3'
miRNA:   3'- -CGGCGGGCUGc-GG---------------CCGAUGCu----------CCCGa -5'
9051 5' -63.8 NC_002512.2 + 49456 0.66 0.673636
Target:  5'- cGCCGCCCGggGCGCCGucacCGAGGaCg -3'
miRNA:   3'- -CGGCGGGC--UGCGGCcgauGCUCCcGa -5'
9051 5' -63.8 NC_002512.2 + 70930 0.66 0.673636
Target:  5'- aCCGCUCGcCGCCGuuGCUGacCGAGaGGCc -3'
miRNA:   3'- cGGCGGGCuGCGGC--CGAU--GCUC-CCGa -5'
9051 5' -63.8 NC_002512.2 + 152114 0.66 0.673636
Target:  5'- uCCGCCCGAC-CCGGagucUGGGGGa- -3'
miRNA:   3'- cGGCGGGCUGcGGCCgau-GCUCCCga -5'
9051 5' -63.8 NC_002512.2 + 124494 0.66 0.673636
Target:  5'- uGCCGCCCaagagcguCGCCGGgU-CGAuGGGUc -3'
miRNA:   3'- -CGGCGGGcu------GCGGCCgAuGCU-CCCGa -5'
9051 5' -63.8 NC_002512.2 + 186215 0.66 0.673636
Target:  5'- cGCCGa-UGACGCCgcGGCcgccacCGAGGGCg -3'
miRNA:   3'- -CGGCggGCUGCGG--CCGau----GCUCCCGa -5'
9051 5' -63.8 NC_002512.2 + 85268 0.66 0.673636
Target:  5'- gGCCGCCaCGuccaGCgCGGCgcggaccucgUGCGAGGGg- -3'
miRNA:   3'- -CGGCGG-GCug--CG-GCCG----------AUGCUCCCga -5'
9051 5' -63.8 NC_002512.2 + 122966 0.66 0.673636
Target:  5'- -gCGCUCG-UGCgGGUgcGCGAGGGCg -3'
miRNA:   3'- cgGCGGGCuGCGgCCGa-UGCUCCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.