miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9053 3' -55.2 NC_002512.2 + 76553 0.66 0.979594
Target:  5'- cCGAcCCGGACCgGCCCaGCGGaacCACc -3'
miRNA:   3'- -GCUaGGUCUGG-UGGG-CGCCaauGUGc -5'
9053 3' -55.2 NC_002512.2 + 73853 0.66 0.979594
Target:  5'- uGAUCaaAGACCGCCCG-GGaucACACa -3'
miRNA:   3'- gCUAGg-UCUGGUGGGCgCCaa-UGUGc -5'
9053 3' -55.2 NC_002512.2 + 169019 0.66 0.979594
Target:  5'- gCGAUCCGGGCgGgcgUCCGCGaGcgGCGCc -3'
miRNA:   3'- -GCUAGGUCUGgU---GGGCGC-CaaUGUGc -5'
9053 3' -55.2 NC_002512.2 + 108315 0.66 0.979594
Target:  5'- uGGUCCAuGGCgGCgCGCGGcgggcggucgGCGCGg -3'
miRNA:   3'- gCUAGGU-CUGgUGgGCGCCaa--------UGUGC- -5'
9053 3' -55.2 NC_002512.2 + 120049 0.66 0.979594
Target:  5'- cCGGUCCccgaCGCCCGgCGGUUcgacgugaACGCGg -3'
miRNA:   3'- -GCUAGGucugGUGGGC-GCCAA--------UGUGC- -5'
9053 3' -55.2 NC_002512.2 + 162010 0.66 0.979379
Target:  5'- gGAUgCGGACCGCCUggccgacggcgagGUGGUgcccgauucuaUGCGCGu -3'
miRNA:   3'- gCUAgGUCUGGUGGG-------------CGCCA-----------AUGUGC- -5'
9053 3' -55.2 NC_002512.2 + 40676 0.66 0.979379
Target:  5'- gGAUCCgacgucgAGcauGCCGCCCGCGGcgAcCugGg -3'
miRNA:   3'- gCUAGG-------UC---UGGUGGGCGCCaaU-GugC- -5'
9053 3' -55.2 NC_002512.2 + 128191 0.66 0.977373
Target:  5'- cCGAg-CGGGCCGCCgGCGGgaccggGgACGg -3'
miRNA:   3'- -GCUagGUCUGGUGGgCGCCaa----UgUGC- -5'
9053 3' -55.2 NC_002512.2 + 78005 0.66 0.977373
Target:  5'- aCGAUCCgcGGAUCGCCgGCGcc--CACGa -3'
miRNA:   3'- -GCUAGG--UCUGGUGGgCGCcaauGUGC- -5'
9053 3' -55.2 NC_002512.2 + 71061 0.66 0.977373
Target:  5'- cCGcgUCAGcACCuCCCGCaGGUU-CGCGg -3'
miRNA:   3'- -GCuaGGUC-UGGuGGGCG-CCAAuGUGC- -5'
9053 3' -55.2 NC_002512.2 + 10969 0.66 0.977373
Target:  5'- uCGggCCAGgcagcggcacgaGCCGcCCCGCGuGgcGCGCGa -3'
miRNA:   3'- -GCuaGGUC------------UGGU-GGGCGC-CaaUGUGC- -5'
9053 3' -55.2 NC_002512.2 + 150282 0.66 0.977373
Target:  5'- gCGAcCCGGcgcuGCCGCCCGCGaagAgGCGg -3'
miRNA:   3'- -GCUaGGUC----UGGUGGGCGCcaaUgUGC- -5'
9053 3' -55.2 NC_002512.2 + 123318 0.66 0.977373
Target:  5'- aGAUCggacaGGACUACCUGCGGgagaagaACGa -3'
miRNA:   3'- gCUAGg----UCUGGUGGGCGCCaaug---UGC- -5'
9053 3' -55.2 NC_002512.2 + 149302 0.66 0.977373
Target:  5'- aGAUCgucGACCGCCgCGCGGgcuCGCc -3'
miRNA:   3'- gCUAGgu-CUGGUGG-GCGCCaauGUGc -5'
9053 3' -55.2 NC_002512.2 + 77070 0.66 0.977373
Target:  5'- uGAUCCuGcucGCCGCCCGCcGUcgcCGCGg -3'
miRNA:   3'- gCUAGGuC---UGGUGGGCGcCAau-GUGC- -5'
9053 3' -55.2 NC_002512.2 + 95684 0.66 0.977373
Target:  5'- gCGuccgCCGGGCCuCCgGCGGggACGgGg -3'
miRNA:   3'- -GCua--GGUCUGGuGGgCGCCaaUGUgC- -5'
9053 3' -55.2 NC_002512.2 + 107722 0.66 0.976674
Target:  5'- gGAUCCgAGACCgucuucacgucgaaGCCCGCGaucuuccGCACGu -3'
miRNA:   3'- gCUAGG-UCUGG--------------UGGGCGCcaa----UGUGC- -5'
9053 3' -55.2 NC_002512.2 + 157367 0.66 0.97498
Target:  5'- aGGUCCGGGCCGCCgGgCaGggAC-CGg -3'
miRNA:   3'- gCUAGGUCUGGUGGgC-GcCaaUGuGC- -5'
9053 3' -55.2 NC_002512.2 + 202730 0.66 0.97498
Target:  5'- gGGUCCGcucUCAUCCGCGG--ACACGa -3'
miRNA:   3'- gCUAGGUcu-GGUGGGCGCCaaUGUGC- -5'
9053 3' -55.2 NC_002512.2 + 107624 0.66 0.97498
Target:  5'- gCGAgUCGGgcgGCUGCCCGUGGUU-CGCGu -3'
miRNA:   3'- -GCUaGGUC---UGGUGGGCGCCAAuGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.