miRNA display CGI


Results 1 - 20 of 376 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9053 5' -60.7 NC_002512.2 + 225466 0.66 0.866691
Target:  5'- aCACuuucaGGGCUCCGGUGAaCgGGUCCa -3'
miRNA:   3'- -GUGcag--CCUGGGGCCGCUgGgCUAGG- -5'
9053 5' -60.7 NC_002512.2 + 103143 0.66 0.866691
Target:  5'- gGCGucUCGGGCCaagaGGCGACgcgCCGcgCCc -3'
miRNA:   3'- gUGC--AGCCUGGgg--CCGCUG---GGCuaGG- -5'
9053 5' -60.7 NC_002512.2 + 111796 0.66 0.866691
Target:  5'- cCGCG-CGGucGCCgCCGGCG-CCgGAgCCg -3'
miRNA:   3'- -GUGCaGCC--UGG-GGCCGCuGGgCUaGG- -5'
9053 5' -60.7 NC_002512.2 + 92718 0.66 0.866691
Target:  5'- -cCGUaCGGACgUCCGGgGggcgcGCUCGGUCCg -3'
miRNA:   3'- guGCA-GCCUG-GGGCCgC-----UGGGCUAGG- -5'
9053 5' -60.7 NC_002512.2 + 124627 0.66 0.866691
Target:  5'- gAUGUCGcuGGCCCU-GUGGCCCGAgaagaggCCg -3'
miRNA:   3'- gUGCAGC--CUGGGGcCGCUGGGCUa------GG- -5'
9053 5' -60.7 NC_002512.2 + 136589 0.66 0.866691
Target:  5'- aACGucUCGGACCCCc-UGugCaCGGUCCg -3'
miRNA:   3'- gUGC--AGCCUGGGGccGCugG-GCUAGG- -5'
9053 5' -60.7 NC_002512.2 + 227979 0.66 0.866691
Target:  5'- -----aGGGCCCCGGCG--CCGAgggCCg -3'
miRNA:   3'- gugcagCCUGGGGCCGCugGGCUa--GG- -5'
9053 5' -60.7 NC_002512.2 + 99906 0.66 0.866691
Target:  5'- -cCGUCgaGGGCgCCGGgGGCCCG--CCg -3'
miRNA:   3'- guGCAG--CCUGgGGCCgCUGGGCuaGG- -5'
9053 5' -60.7 NC_002512.2 + 204732 0.66 0.866691
Target:  5'- gGCGgggggcCGGACCCgGGUG-CUcagCGAUCCc -3'
miRNA:   3'- gUGCa-----GCCUGGGgCCGCuGG---GCUAGG- -5'
9053 5' -60.7 NC_002512.2 + 95994 0.66 0.866691
Target:  5'- aGCGcCcgGGACCgCCGGcCGAgCCGcUCCu -3'
miRNA:   3'- gUGCaG--CCUGG-GGCC-GCUgGGCuAGG- -5'
9053 5' -60.7 NC_002512.2 + 71189 0.66 0.866691
Target:  5'- cCACcUCGGGCaccuccccguCCCGGcCGGCCaUGAUCUc -3'
miRNA:   3'- -GUGcAGCCUG----------GGGCC-GCUGG-GCUAGG- -5'
9053 5' -60.7 NC_002512.2 + 162006 0.66 0.866
Target:  5'- uGCGggaugCGGACCgccuggccgaCGGCGaggugguGCCCGAUUCu -3'
miRNA:   3'- gUGCa----GCCUGGg---------GCCGC-------UGGGCUAGG- -5'
9053 5' -60.7 NC_002512.2 + 102048 0.66 0.864612
Target:  5'- uCGCGgCGGACgccgccgacgaccuCCCGGagccggGACCCGAguucuUCCg -3'
miRNA:   3'- -GUGCaGCCUG--------------GGGCCg-----CUGGGCU-----AGG- -5'
9053 5' -60.7 NC_002512.2 + 80667 0.66 0.862516
Target:  5'- -cCGUCGGuCCCgCGGCGGCggCGAcgggggcgagcggcgUCCg -3'
miRNA:   3'- guGCAGCCuGGG-GCCGCUGg-GCU---------------AGG- -5'
9053 5' -60.7 NC_002512.2 + 139407 0.66 0.859697
Target:  5'- -cCGUCGaGgacGCCCCGGUGAUCgGGgacCCg -3'
miRNA:   3'- guGCAGC-C---UGGGGCCGCUGGgCUa--GG- -5'
9053 5' -60.7 NC_002512.2 + 106186 0.66 0.859697
Target:  5'- gACGcCGGGuCCUucggguUGGCGAucaUCCGGUCCg -3'
miRNA:   3'- gUGCaGCCU-GGG------GCCGCU---GGGCUAGG- -5'
9053 5' -60.7 NC_002512.2 + 229594 0.66 0.859697
Target:  5'- gGCGUgGGcuGCCCUGGCccCCCGucgcgCCg -3'
miRNA:   3'- gUGCAgCC--UGGGGCCGcuGGGCua---GG- -5'
9053 5' -60.7 NC_002512.2 + 134569 0.66 0.859697
Target:  5'- aCAUGUucCGGua--CGGCGGCCCGcgGUCCg -3'
miRNA:   3'- -GUGCA--GCCugggGCCGCUGGGC--UAGG- -5'
9053 5' -60.7 NC_002512.2 + 88023 0.66 0.859697
Target:  5'- gGCGUUccagaGGACCgugUUGGcCGACCUGAUCUc -3'
miRNA:   3'- gUGCAG-----CCUGG---GGCC-GCUGGGCUAGG- -5'
9053 5' -60.7 NC_002512.2 + 25091 0.66 0.859697
Target:  5'- gACG-CGGACCUCccgGGCGucuccuuccCCCGGUCg -3'
miRNA:   3'- gUGCaGCCUGGGG---CCGCu--------GGGCUAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.