Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9055 | 3' | -52.8 | NC_002512.2 | + | 174269 | 0.67 | 0.986611 |
Target: 5'- cGGGUCCCGGGG-UCUCGggGgu-UCGc -3' miRNA: 3'- -UCUGGGGCUCCaAGAGCuuCaacAGC- -5' |
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9055 | 3' | -52.8 | NC_002512.2 | + | 184212 | 0.67 | 0.988123 |
Target: 5'- cGGACCgCG-GGUUCUCucuGggGUCGa -3' miRNA: 3'- -UCUGGgGCuCCAAGAGcuuCaaCAGC- -5' |
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9055 | 3' | -52.8 | NC_002512.2 | + | 132241 | 0.66 | 0.991879 |
Target: 5'- gAGACggCGAGGUUCUCGAGcugcGUCa -3' miRNA: 3'- -UCUGggGCUCCAAGAGCUUcaa-CAGc -5' |
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9055 | 3' | -52.8 | NC_002512.2 | + | 155380 | 0.66 | 0.994625 |
Target: 5'- gGGACCgCGAGGcuggCGAGGUccucuccguccUGUCGc -3' miRNA: 3'- -UCUGGgGCUCCaagaGCUUCA-----------ACAGC- -5' |
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9055 | 3' | -52.8 | NC_002512.2 | + | 210949 | 0.66 | 0.994625 |
Target: 5'- -cGCCCCGAGGccaaCGAGGUcGUCc -3' miRNA: 3'- ucUGGGGCUCCaagaGCUUCAaCAGc -5' |
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9055 | 3' | -52.8 | NC_002512.2 | + | 221976 | 0.66 | 0.995351 |
Target: 5'- aAGA-CCCGAGGUUCgUCcGGGUcGUCu -3' miRNA: 3'- -UCUgGGGCUCCAAG-AGcUUCAaCAGc -5' |
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9055 | 3' | -52.8 | NC_002512.2 | + | 128051 | 0.66 | 0.995351 |
Target: 5'- cGGCCCCGAcGGUcg-CGgcGUcGUCGu -3' miRNA: 3'- uCUGGGGCU-CCAagaGCuuCAaCAGC- -5' |
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9055 | 3' | -52.8 | NC_002512.2 | + | 192497 | 0.66 | 0.995351 |
Target: 5'- gGGACgcgCUCGAGGUcuUCUCGGAGgacaugggGUCc -3' miRNA: 3'- -UCUG---GGGCUCCA--AGAGCUUCaa------CAGc -5' |
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9055 | 3' | -52.8 | NC_002512.2 | + | 144153 | 1.09 | 0.010584 |
Target: 5'- gAGACCCCGAGGUUCUCGAAGUUGUCGc -3' miRNA: 3'- -UCUGGGGCUCCAAGAGCUUCAACAGC- -5' |
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9055 | 3' | -52.8 | NC_002512.2 | + | 199500 | 0.73 | 0.849654 |
Target: 5'- aGGGCCgCGAGGaUCaggUCGAGGUcGUCGg -3' miRNA: 3'- -UCUGGgGCUCCaAG---AGCUUCAaCAGC- -5' |
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9055 | 3' | -52.8 | NC_002512.2 | + | 35676 | 0.69 | 0.965612 |
Target: 5'- gAGACagaCCGuGGUUUuuguUCGGAGUaGUCGg -3' miRNA: 3'- -UCUGg--GGCuCCAAG----AGCUUCAaCAGC- -5' |
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9055 | 3' | -52.8 | NC_002512.2 | + | 129706 | 0.67 | 0.984954 |
Target: 5'- cGA-CUCGAGGUaacCGggGUUGUCGa -3' miRNA: 3'- uCUgGGGCUCCAagaGCuuCAACAGC- -5' |
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9055 | 3' | -52.8 | NC_002512.2 | + | 152777 | 0.68 | 0.977678 |
Target: 5'- cGGACCCCGcGGUUCcCGGucggaaagcgcugccGGUgaacGUCGg -3' miRNA: 3'- -UCUGGGGCuCCAAGaGCU---------------UCAa---CAGC- -5' |
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9055 | 3' | -52.8 | NC_002512.2 | + | 213011 | 0.69 | 0.958837 |
Target: 5'- cGGgCCCGGGGcccUCUCGAGGUgcGUCc -3' miRNA: 3'- uCUgGGGCUCCa--AGAGCUUCAa-CAGc -5' |
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9055 | 3' | -52.8 | NC_002512.2 | + | 95872 | 0.67 | 0.988123 |
Target: 5'- aGGGCCgcgcgCCGAGGaUCUCGAGGUcgcccggccgggUGcCGa -3' miRNA: 3'- -UCUGG-----GGCUCCaAGAGCUUCA------------ACaGC- -5' |
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9055 | 3' | -52.8 | NC_002512.2 | + | 185416 | 0.68 | 0.971562 |
Target: 5'- cGGCCCCGGGGcgccCUgGAGGUcuUCGa -3' miRNA: 3'- uCUGGGGCUCCaa--GAgCUUCAacAGC- -5' |
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9055 | 3' | -52.8 | NC_002512.2 | + | 86915 | 0.68 | 0.979042 |
Target: 5'- gAGACCCUGucGU--UCGAGGUcauccUGUCGg -3' miRNA: 3'- -UCUGGGGCucCAagAGCUUCA-----ACAGC- -5' |
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9055 | 3' | -52.8 | NC_002512.2 | + | 87543 | 0.66 | 0.995351 |
Target: 5'- cGACCCUGAGGUcCagGAGGgcgGUUu -3' miRNA: 3'- uCUGGGGCUCCAaGagCUUCaa-CAGc -5' |
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9055 | 3' | -52.8 | NC_002512.2 | + | 135232 | 0.71 | 0.922839 |
Target: 5'- cGGCCCCGGGccgcCUCGAGGccGUCGu -3' miRNA: 3'- uCUGGGGCUCcaa-GAGCUUCaaCAGC- -5' |
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9055 | 3' | -52.8 | NC_002512.2 | + | 71240 | 0.66 | 0.991879 |
Target: 5'- uGGCCUCGAcgucGGgg-UCGAAGggGUCGg -3' miRNA: 3'- uCUGGGGCU----CCaagAGCUUCaaCAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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