miRNA display CGI


Results 1 - 20 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9057 3' -56.6 NC_002512.2 + 77590 0.66 0.950293
Target:  5'- aCGCCGAGcggucccucgCGGauCGCCGCCggaacgACGAGCGa -3'
miRNA:   3'- -GUGGCUCua--------GUC--GCGGCGG------UGCUUGU- -5'
9057 3' -56.6 NC_002512.2 + 14106 0.66 0.950293
Target:  5'- -uCCGAGAgagggaacggaCGGCGCUGCCGCuGGAgAa -3'
miRNA:   3'- guGGCUCUa----------GUCGCGGCGGUG-CUUgU- -5'
9057 3' -56.6 NC_002512.2 + 227232 0.66 0.950293
Target:  5'- gACCGGGA--GGCGCgGCgGaCGGGCGg -3'
miRNA:   3'- gUGGCUCUagUCGCGgCGgU-GCUUGU- -5'
9057 3' -56.6 NC_002512.2 + 147752 0.66 0.950293
Target:  5'- gACCGAGAcgugcgcCAGCGCgGCCGuccCGAcucGCGg -3'
miRNA:   3'- gUGGCUCUa------GUCGCGgCGGU---GCU---UGU- -5'
9057 3' -56.6 NC_002512.2 + 149297 0.66 0.950293
Target:  5'- gGgCGAGAUCGuCGaCCGCCgcGCGGGCu -3'
miRNA:   3'- gUgGCUCUAGUcGC-GGCGG--UGCUUGu -5'
9057 3' -56.6 NC_002512.2 + 118587 0.66 0.950293
Target:  5'- aGCCGcGAUCGGCGgcccucuccCCGCgGCGGccgACAu -3'
miRNA:   3'- gUGGCuCUAGUCGC---------GGCGgUGCU---UGU- -5'
9057 3' -56.6 NC_002512.2 + 129508 0.66 0.950293
Target:  5'- gGCCGGGAagUCGGgaGCCGCgUACaGGACGa -3'
miRNA:   3'- gUGGCUCU--AGUCg-CGGCG-GUG-CUUGU- -5'
9057 3' -56.6 NC_002512.2 + 97878 0.66 0.950293
Target:  5'- cCGCCGAGGUCcccccGGCGCCcggggcggcCCACGcGACc -3'
miRNA:   3'- -GUGGCUCUAG-----UCGCGGc--------GGUGC-UUGu -5'
9057 3' -56.6 NC_002512.2 + 224801 0.66 0.950293
Target:  5'- gCGCCGAcgcCGGCGacgacgaccaaCGCCGCGGGCGg -3'
miRNA:   3'- -GUGGCUcuaGUCGCg----------GCGGUGCUUGU- -5'
9057 3' -56.6 NC_002512.2 + 40538 0.66 0.946159
Target:  5'- gUACCGGGAUgGGgG-UGCCACGAu-- -3'
miRNA:   3'- -GUGGCUCUAgUCgCgGCGGUGCUugu -5'
9057 3' -56.6 NC_002512.2 + 135202 0.66 0.946159
Target:  5'- uCGCaCGAGggCAGCuGCgCGCCGgaGAGCGu -3'
miRNA:   3'- -GUG-GCUCuaGUCG-CG-GCGGUg-CUUGU- -5'
9057 3' -56.6 NC_002512.2 + 68367 0.66 0.946159
Target:  5'- -cCCGGGcucggCGGUGCCGuCCGCGcAGCGc -3'
miRNA:   3'- guGGCUCua---GUCGCGGC-GGUGC-UUGU- -5'
9057 3' -56.6 NC_002512.2 + 113745 0.66 0.946159
Target:  5'- gGCCGAGGU--GCGCgGUCAUGGAg- -3'
miRNA:   3'- gUGGCUCUAguCGCGgCGGUGCUUgu -5'
9057 3' -56.6 NC_002512.2 + 74499 0.66 0.945734
Target:  5'- -uCCGcGAUCgcccgccGGCGCCGCCGCcccgaccucGAGCGc -3'
miRNA:   3'- guGGCuCUAG-------UCGCGGCGGUG---------CUUGU- -5'
9057 3' -56.6 NC_002512.2 + 90628 0.66 0.945734
Target:  5'- gCGCCGGG--CGGCGCgacccggCGCCGCGGccGCGg -3'
miRNA:   3'- -GUGGCUCuaGUCGCG-------GCGGUGCU--UGU- -5'
9057 3' -56.6 NC_002512.2 + 214291 0.66 0.943574
Target:  5'- -cCCGAGGgcuucaccuucgucuUCGGCguGCCGC-ACGAGCAg -3'
miRNA:   3'- guGGCUCU---------------AGUCG--CGGCGgUGCUUGU- -5'
9057 3' -56.6 NC_002512.2 + 8060 0.66 0.941806
Target:  5'- -cCCGcGGGUCGGaCGCCGagACGAGCu -3'
miRNA:   3'- guGGC-UCUAGUC-GCGGCggUGCUUGu -5'
9057 3' -56.6 NC_002512.2 + 95982 0.66 0.941806
Target:  5'- gCAgCGGcGGUCGGCGUccggCGCCGCGAcCGc -3'
miRNA:   3'- -GUgGCU-CUAGUCGCG----GCGGUGCUuGU- -5'
9057 3' -56.6 NC_002512.2 + 105004 0.66 0.941806
Target:  5'- uCGCCGuGA-CGGgGCCGCCGCc---- -3'
miRNA:   3'- -GUGGCuCUaGUCgCGGCGGUGcuugu -5'
9057 3' -56.6 NC_002512.2 + 41185 0.66 0.941806
Target:  5'- gGCCGAGG-CGGaggaGCCGCCGUGAuCGu -3'
miRNA:   3'- gUGGCUCUaGUCg---CGGCGGUGCUuGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.