miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9057 5' -57.5 NC_002512.2 + 221491 0.66 0.945944
Target:  5'- uGGCGCUCGgcguccuauuuUCCUGcgcGGcgccgCGGAUCCUCg -3'
miRNA:   3'- -CUGCGAGC-----------AGGGC---UCua---GCCUAGGGG- -5'
9057 5' -57.5 NC_002512.2 + 75220 0.66 0.945944
Target:  5'- gGACGgUCG-CCCGAcGUCGGAcggUCgCUCg -3'
miRNA:   3'- -CUGCgAGCaGGGCUcUAGCCU---AG-GGG- -5'
9057 5' -57.5 NC_002512.2 + 219939 0.66 0.945944
Target:  5'- cGACGCgCGggg-GAGggUGGAUCCCCc -3'
miRNA:   3'- -CUGCGaGCagggCUCuaGCCUAGGGG- -5'
9057 5' -57.5 NC_002512.2 + 24217 0.66 0.945527
Target:  5'- uGACGC-CGgagcugUCCGAGGcgUCGGGcccgccgacggcgUCCCCc -3'
miRNA:   3'- -CUGCGaGCa-----GGGCUCU--AGCCU-------------AGGGG- -5'
9057 5' -57.5 NC_002512.2 + 182800 0.66 0.944261
Target:  5'- cGCGUUCGucagUCCCGAGAgCGacugcuccuuuuuGUCCCCg -3'
miRNA:   3'- cUGCGAGC----AGGGCUCUaGCc------------UAGGGG- -5'
9057 5' -57.5 NC_002512.2 + 159340 0.66 0.943406
Target:  5'- -cCGCcCGUCCuuuauguaucggcguCGGGGUCGGGgcgUCCCa -3'
miRNA:   3'- cuGCGaGCAGG---------------GCUCUAGCCUa--GGGG- -5'
9057 5' -57.5 NC_002512.2 + 200303 0.66 0.941672
Target:  5'- uGGgGCUCGUCCgcccuCGGGGagCGGcUUCCCg -3'
miRNA:   3'- -CUgCGAGCAGG-----GCUCUa-GCCuAGGGG- -5'
9057 5' -57.5 NC_002512.2 + 103551 0.66 0.941672
Target:  5'- cGCGCcCGUCCCG-GAcgCGGcggCCUCg -3'
miRNA:   3'- cUGCGaGCAGGGCuCUa-GCCua-GGGG- -5'
9057 5' -57.5 NC_002512.2 + 133216 0.66 0.941672
Target:  5'- gGACG-UCGUCCgcccagcgaggaCGGGAgggcggCGGcgCCCCg -3'
miRNA:   3'- -CUGCgAGCAGG------------GCUCUa-----GCCuaGGGG- -5'
9057 5' -57.5 NC_002512.2 + 181999 0.66 0.941672
Target:  5'- uGGCGgaCGUCCuCGGGGUCaGG-CCCa -3'
miRNA:   3'- -CUGCgaGCAGG-GCUCUAGcCUaGGGg -5'
9057 5' -57.5 NC_002512.2 + 51082 0.66 0.941672
Target:  5'- uGugGCUCGgagguaCuuGGGAaccCGGGagUCCCCg -3'
miRNA:   3'- -CugCGAGCa-----GggCUCUa--GCCU--AGGGG- -5'
9057 5' -57.5 NC_002512.2 + 34609 0.66 0.941672
Target:  5'- uGGCGUcCGUCCCGAcuUCGaGuGUCCCg -3'
miRNA:   3'- -CUGCGaGCAGGGCUcuAGC-C-UAGGGg -5'
9057 5' -57.5 NC_002512.2 + 196170 0.66 0.941672
Target:  5'- cGACGaggggCGagCCCGAGGgggcgacggcCGGGUCCCUg -3'
miRNA:   3'- -CUGCga---GCa-GGGCUCUa---------GCCUAGGGG- -5'
9057 5' -57.5 NC_002512.2 + 3714 0.66 0.941672
Target:  5'- -cCGgUCGcUCCCcGGGUCGGAcucguaCCCCa -3'
miRNA:   3'- cuGCgAGC-AGGGcUCUAGCCUa-----GGGG- -5'
9057 5' -57.5 NC_002512.2 + 96684 0.66 0.940349
Target:  5'- gGACGa-CGUCCCGaAGAUaaCGGGUuucgacuauuugacCCCCg -3'
miRNA:   3'- -CUGCgaGCAGGGC-UCUA--GCCUA--------------GGGG- -5'
9057 5' -57.5 NC_002512.2 + 132741 0.66 0.937187
Target:  5'- aGGCGCagcgcggcgUCGUCCCGcAGG-CGGGcgaaggucUCCCUc -3'
miRNA:   3'- -CUGCG---------AGCAGGGC-UCUaGCCU--------AGGGG- -5'
9057 5' -57.5 NC_002512.2 + 45939 0.66 0.932488
Target:  5'- aGCGCgCGUCCCGGGAgcagaaccagCcgagccgcugaaGGGUCCCg -3'
miRNA:   3'- cUGCGaGCAGGGCUCUa---------G------------CCUAGGGg -5'
9057 5' -57.5 NC_002512.2 + 92158 0.66 0.932488
Target:  5'- gGACGCUCGUCCCugGAGAacgcCGGccauGUCUa- -3'
miRNA:   3'- -CUGCGAGCAGGG--CUCUa---GCC----UAGGgg -5'
9057 5' -57.5 NC_002512.2 + 111950 0.66 0.932488
Target:  5'- cGGCGCUCa--CCGGGGUCaGGAUCauCUCg -3'
miRNA:   3'- -CUGCGAGcagGGCUCUAG-CCUAG--GGG- -5'
9057 5' -57.5 NC_002512.2 + 128400 0.66 0.932488
Target:  5'- aGCGaCUCGUCCgGGGA-CGGGgggUCUCg -3'
miRNA:   3'- cUGC-GAGCAGGgCUCUaGCCUa--GGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.