miRNA display CGI


Results 21 - 40 of 218 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9060 3' -53.3 NC_002512.2 + 131044 0.66 0.989305
Target:  5'- -gCCGCGGgggaggaCGGCGCCGCGccGGAg- -3'
miRNA:   3'- agGGCGCUa------GUCGUGGCGUuuCUUgu -5'
9060 3' -53.3 NC_002512.2 + 129200 0.66 0.989305
Target:  5'- -aCCGUGcg-GGCGCUGCAGAGcAGCAc -3'
miRNA:   3'- agGGCGCuagUCGUGGCGUUUC-UUGU- -5'
9060 3' -53.3 NC_002512.2 + 106218 0.66 0.989305
Target:  5'- gUCCGCGGccauggCGGCGCgCGCGcGGGAACc -3'
miRNA:   3'- aGGGCGCUa-----GUCGUG-GCGU-UUCUUGu -5'
9060 3' -53.3 NC_002512.2 + 185215 0.66 0.987894
Target:  5'- -gCCGCGGU-GGC-CCGCGucguGGAACGc -3'
miRNA:   3'- agGGCGCUAgUCGuGGCGUu---UCUUGU- -5'
9060 3' -53.3 NC_002512.2 + 149416 0.66 0.987894
Target:  5'- -gCCGCGAg-GGgACCGCGgcGGGGGCGg -3'
miRNA:   3'- agGGCGCUagUCgUGGCGU--UUCUUGU- -5'
9060 3' -53.3 NC_002512.2 + 103050 0.66 0.987894
Target:  5'- -aCCGgGggCAGgAgCGCGGGGAACGg -3'
miRNA:   3'- agGGCgCuaGUCgUgGCGUUUCUUGU- -5'
9060 3' -53.3 NC_002512.2 + 12599 0.66 0.987894
Target:  5'- cUCCCgGCGcgCGGU-CCGCAuggcGGAGCu -3'
miRNA:   3'- -AGGG-CGCuaGUCGuGGCGUu---UCUUGu -5'
9060 3' -53.3 NC_002512.2 + 11431 0.66 0.987894
Target:  5'- -aCCGCGGUCcgcggGGaCGCCGCGgacGGGGGCc -3'
miRNA:   3'- agGGCGCUAG-----UC-GUGGCGU---UUCUUGu -5'
9060 3' -53.3 NC_002512.2 + 81784 0.66 0.987894
Target:  5'- cCUCGUcuUCGGCGCCGCcgccgccgccGGGGGACGg -3'
miRNA:   3'- aGGGCGcuAGUCGUGGCG----------UUUCUUGU- -5'
9060 3' -53.3 NC_002512.2 + 76160 0.66 0.987894
Target:  5'- cCCCaCGGaCAGCGCCGUGAgacccgaccAGGACGu -3'
miRNA:   3'- aGGGcGCUaGUCGUGGCGUU---------UCUUGU- -5'
9060 3' -53.3 NC_002512.2 + 74498 0.66 0.986823
Target:  5'- cUCCGCGAUCgcccgccGGCGCCGCcgccccgaccucGAGCGc -3'
miRNA:   3'- aGGGCGCUAG-------UCGUGGCGuuu---------CUUGU- -5'
9060 3' -53.3 NC_002512.2 + 28141 0.66 0.986342
Target:  5'- cCCCGgGAUCGGCGCCcCAGc----- -3'
miRNA:   3'- aGGGCgCUAGUCGUGGcGUUucuugu -5'
9060 3' -53.3 NC_002512.2 + 16346 0.66 0.986342
Target:  5'- cCCCGCG--CAGCAgaCGCuccGAGGGCAc -3'
miRNA:   3'- aGGGCGCuaGUCGUg-GCGu--UUCUUGU- -5'
9060 3' -53.3 NC_002512.2 + 154704 0.66 0.986342
Target:  5'- gUCCgGCG-UCgAGCGgCGCGAcGGAACGg -3'
miRNA:   3'- -AGGgCGCuAG-UCGUgGCGUU-UCUUGU- -5'
9060 3' -53.3 NC_002512.2 + 98151 0.66 0.986342
Target:  5'- gCCCGCcccggCGGuCGCCGCGGucuGGACGg -3'
miRNA:   3'- aGGGCGcua--GUC-GUGGCGUUu--CUUGU- -5'
9060 3' -53.3 NC_002512.2 + 1628 0.66 0.986342
Target:  5'- gUCCGCGGUCAGUcgcccCCGCGuccGGCAc -3'
miRNA:   3'- aGGGCGCUAGUCGu----GGCGUuucUUGU- -5'
9060 3' -53.3 NC_002512.2 + 60846 0.66 0.986342
Target:  5'- gCCCGaggaGAUgcCGGCGCCGCucgcGGACGc -3'
miRNA:   3'- aGGGCg---CUA--GUCGUGGCGuuu-CUUGU- -5'
9060 3' -53.3 NC_002512.2 + 62231 0.66 0.984643
Target:  5'- gUCCUGCGAg-AGgACCGacgAGAGGACGa -3'
miRNA:   3'- -AGGGCGCUagUCgUGGCg--UUUCUUGU- -5'
9060 3' -53.3 NC_002512.2 + 120695 0.66 0.984643
Target:  5'- gCCCGCGggCGGUuUCGCAucGAGa- -3'
miRNA:   3'- aGGGCGCuaGUCGuGGCGUuuCUUgu -5'
9060 3' -53.3 NC_002512.2 + 4097 0.66 0.984643
Target:  5'- gCCCGCGGccCGGcCGgCGCAGccucgGGAACAg -3'
miRNA:   3'- aGGGCGCUa-GUC-GUgGCGUU-----UCUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.