miRNA display CGI


Results 41 - 60 of 393 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9060 5' -60.9 NC_002512.2 + 108491 0.66 0.8534
Target:  5'- gACGgUCGUCaagggCGAgGCCGGgCCcgGCGCc -3'
miRNA:   3'- gUGCaAGCAGg----GCUgCGGCC-GG--CGCG- -5'
9060 5' -60.9 NC_002512.2 + 155238 0.66 0.8534
Target:  5'- cCGCGgcCGUCCCGcccgucgcgGCGUcgaCGGCuCGCGg -3'
miRNA:   3'- -GUGCaaGCAGGGC---------UGCG---GCCG-GCGCg -5'
9060 5' -60.9 NC_002512.2 + 17481 0.66 0.8534
Target:  5'- cCGCccgUCGUCCU--CGUCGGCCGCc- -3'
miRNA:   3'- -GUGca-AGCAGGGcuGCGGCCGGCGcg -5'
9060 5' -60.9 NC_002512.2 + 82091 0.66 0.8534
Target:  5'- cCACGggCGcgcguaagcuuuUUCCGAgcCGCgagucgggaCGGCCGCGCu -3'
miRNA:   3'- -GUGCaaGC------------AGGGCU--GCG---------GCCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 20257 0.66 0.8534
Target:  5'- -cCGUcgUCGUCCU--CGuCCGGCCGCa- -3'
miRNA:   3'- guGCA--AGCAGGGcuGC-GGCCGGCGcg -5'
9060 5' -60.9 NC_002512.2 + 113191 0.66 0.8534
Target:  5'- uGCGUU-GUUCCagagcGGCGUCGGCCaGCGg -3'
miRNA:   3'- gUGCAAgCAGGG-----CUGCGGCCGG-CGCg -5'
9060 5' -60.9 NC_002512.2 + 95216 0.66 0.849013
Target:  5'- gCGCGUccguugucguagaaaUCGUUCUccggagggGGCGUCcggagGGCCGCGCg -3'
miRNA:   3'- -GUGCA---------------AGCAGGG--------CUGCGG-----CCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 112840 0.66 0.8534
Target:  5'- gCACGaaCGgcagcagCCCGAacaGCUcgauGGCCGCGUc -3'
miRNA:   3'- -GUGCaaGCa------GGGCUg--CGG----CCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 47620 0.66 0.846055
Target:  5'- gACGUgcaguucccCGUCCUGGCGCCGucGCUGUcccuGCu -3'
miRNA:   3'- gUGCAa--------GCAGGGCUGCGGC--CGGCG----CG- -5'
9060 5' -60.9 NC_002512.2 + 105416 0.66 0.846055
Target:  5'- -cCGUU-GUCgUGGCGCCGGCUcaGCaGCg -3'
miRNA:   3'- guGCAAgCAGgGCUGCGGCCGG--CG-CG- -5'
9060 5' -60.9 NC_002512.2 + 34833 0.66 0.838543
Target:  5'- gACGacCcUCCCGccCGCgGGCCGCGg -3'
miRNA:   3'- gUGCaaGcAGGGCu-GCGgCCGGCGCg -5'
9060 5' -60.9 NC_002512.2 + 147926 0.66 0.815066
Target:  5'- aGCGUuuUCGUCuUCGuCGgCGGCCGC-Cg -3'
miRNA:   3'- gUGCA--AGCAG-GGCuGCgGCCGGCGcG- -5'
9060 5' -60.9 NC_002512.2 + 110642 0.66 0.830871
Target:  5'- gCACGUaCGUCaucaccaccuCCGACGCCaGGuuG-GCg -3'
miRNA:   3'- -GUGCAaGCAG----------GGCUGCGG-CCggCgCG- -5'
9060 5' -60.9 NC_002512.2 + 133341 0.66 0.830871
Target:  5'- gGCGUcCGggaucCCCGGCcCCGGCUcacaccgccgGCGCg -3'
miRNA:   3'- gUGCAaGCa----GGGCUGcGGCCGG----------CGCG- -5'
9060 5' -60.9 NC_002512.2 + 78797 0.66 0.823043
Target:  5'- aCACGUgcaCGUCuCCGGCGC-GGaCCGagacCGCa -3'
miRNA:   3'- -GUGCAa--GCAG-GGCUGCGgCC-GGC----GCG- -5'
9060 5' -60.9 NC_002512.2 + 105047 0.66 0.806946
Target:  5'- uCGCGggccUCG-CUCGGCGaCGGCgGCGUg -3'
miRNA:   3'- -GUGCa---AGCaGGGCUGCgGCCGgCGCG- -5'
9060 5' -60.9 NC_002512.2 + 21286 0.66 0.815066
Target:  5'- gCACGgaaccucgaccUCGUCCCGGa-CCcGCUGCGCg -3'
miRNA:   3'- -GUGCa----------AGCAGGGCUgcGGcCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 35258 0.66 0.815066
Target:  5'- gACGggCagGUCCCccgcGGCGaCGGCCGCGg -3'
miRNA:   3'- gUGCaaG--CAGGG----CUGCgGCCGGCGCg -5'
9060 5' -60.9 NC_002512.2 + 44667 0.66 0.806946
Target:  5'- aCGCGU---UCCaCGACGCgGGCCacCGCg -3'
miRNA:   3'- -GUGCAagcAGG-GCUGCGgCCGGc-GCG- -5'
9060 5' -60.9 NC_002512.2 + 5748 0.66 0.852673
Target:  5'- aCGCGUcCGccUCCCGGCGCggguccaCGGCCGa-- -3'
miRNA:   3'- -GUGCAaGC--AGGGCUGCG-------GCCGGCgcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.