miRNA display CGI


Results 61 - 80 of 393 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9060 5' -60.9 NC_002512.2 + 105416 0.66 0.846055
Target:  5'- -cCGUU-GUCgUGGCGCCGGCUcaGCaGCg -3'
miRNA:   3'- guGCAAgCAGgGCUGCGGCCGG--CG-CG- -5'
9060 5' -60.9 NC_002512.2 + 113191 0.66 0.8534
Target:  5'- uGCGUU-GUUCCagagcGGCGUCGGCCaGCGg -3'
miRNA:   3'- gUGCAAgCAGGG-----CUGCGGCCGG-CGCg -5'
9060 5' -60.9 NC_002512.2 + 35258 0.66 0.815066
Target:  5'- gACGggCagGUCCCccgcGGCGaCGGCCGCGg -3'
miRNA:   3'- gUGCaaG--CAGGG----CUGCgGCCGGCGCg -5'
9060 5' -60.9 NC_002512.2 + 35474 0.66 0.830871
Target:  5'- gGCGUucUCGUacucgaagaCGACGUCGGCCGUcCa -3'
miRNA:   3'- gUGCA--AGCAgg-------GCUGCGGCCGGCGcG- -5'
9060 5' -60.9 NC_002512.2 + 34833 0.66 0.838543
Target:  5'- gACGacCcUCCCGccCGCgGGCCGCGg -3'
miRNA:   3'- gUGCaaGcAGGGCu-GCGgCCGGCGCg -5'
9060 5' -60.9 NC_002512.2 + 48773 0.66 0.830871
Target:  5'- gACGgacgUGUCCCaGACGCUGaGgCGgGCg -3'
miRNA:   3'- gUGCaa--GCAGGG-CUGCGGC-CgGCgCG- -5'
9060 5' -60.9 NC_002512.2 + 67763 0.66 0.823043
Target:  5'- -cCGgggUCGUCuCCGGCGCCggGGUCGuCGg -3'
miRNA:   3'- guGCa--AGCAG-GGCUGCGG--CCGGC-GCg -5'
9060 5' -60.9 NC_002512.2 + 147926 0.66 0.815066
Target:  5'- aGCGUuuUCGUCuUCGuCGgCGGCCGC-Cg -3'
miRNA:   3'- gUGCA--AGCAG-GGCuGCgGCCGGCGcG- -5'
9060 5' -60.9 NC_002512.2 + 126965 0.66 0.846055
Target:  5'- uUACGaccUGgggCCCGugGCCGucgaCCGCGCc -3'
miRNA:   3'- -GUGCaa-GCa--GGGCugCGGCc---GGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 221482 0.66 0.846055
Target:  5'- gCGCGU---UCCUGGCGCuCGGCguccuauuuuccUGCGCg -3'
miRNA:   3'- -GUGCAagcAGGGCUGCG-GCCG------------GCGCG- -5'
9060 5' -60.9 NC_002512.2 + 202158 0.66 0.846055
Target:  5'- gGCGgguggUCGuUCCCGugGUCGuGacgggagaaCGCGCg -3'
miRNA:   3'- gUGCa----AGC-AGGGCugCGGC-Cg--------GCGCG- -5'
9060 5' -60.9 NC_002512.2 + 145906 0.66 0.838543
Target:  5'- gCGCGacCGcCCCG-CGCCGGgcauCCGcCGCc -3'
miRNA:   3'- -GUGCaaGCaGGGCuGCGGCC----GGC-GCG- -5'
9060 5' -60.9 NC_002512.2 + 101189 0.66 0.8534
Target:  5'- gAUGgugUUGUCCgaGACGCCGGCguuCGCc -3'
miRNA:   3'- gUGCa--AGCAGGg-CUGCGGCCGgc-GCG- -5'
9060 5' -60.9 NC_002512.2 + 38851 0.66 0.8534
Target:  5'- cCACGUgcgccgCGcCCCGccuCGCaggcaccuCGGuCCGCGCg -3'
miRNA:   3'- -GUGCAa-----GCaGGGCu--GCG--------GCC-GGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 93362 0.66 0.852673
Target:  5'- aGCGUgcaGUCCCGGgaggggaucgggcCGCaGGgCGCGCc -3'
miRNA:   3'- gUGCAag-CAGGGCU-------------GCGgCCgGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 17481 0.66 0.8534
Target:  5'- cCGCccgUCGUCCU--CGUCGGCCGCc- -3'
miRNA:   3'- -GUGca-AGCAGGGcuGCGGCCGGCGcg -5'
9060 5' -60.9 NC_002512.2 + 82091 0.66 0.8534
Target:  5'- cCACGggCGcgcguaagcuuuUUCCGAgcCGCgagucgggaCGGCCGCGCu -3'
miRNA:   3'- -GUGCaaGC------------AGGGCU--GCG---------GCCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 213001 0.66 0.8534
Target:  5'- cCGCGgccgUCGggcccggggcccUCUCGAggugcgucCGCCGGCUGCGg -3'
miRNA:   3'- -GUGCa---AGC------------AGGGCU--------GCGGCCGGCGCg -5'
9060 5' -60.9 NC_002512.2 + 78797 0.66 0.823043
Target:  5'- aCACGUgcaCGUCuCCGGCGC-GGaCCGagacCGCa -3'
miRNA:   3'- -GUGCAa--GCAG-GGCUGCGgCC-GGC----GCG- -5'
9060 5' -60.9 NC_002512.2 + 146088 0.66 0.849013
Target:  5'- -cCGgcgCG-CCCGACGCgguccucggcggcggCGGCgGCGCc -3'
miRNA:   3'- guGCaa-GCaGGGCUGCG---------------GCCGgCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.