miRNA display CGI


Results 81 - 100 of 393 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9060 5' -60.9 NC_002512.2 + 205037 0.66 0.815066
Target:  5'- cCGCGUcCGcCgCCGA--CCGGCCGCGg -3'
miRNA:   3'- -GUGCAaGCaG-GGCUgcGGCCGGCGCg -5'
9060 5' -60.9 NC_002512.2 + 73699 0.66 0.806946
Target:  5'- gACGa-CGUCCaUGACcaugaGCUGGUCGCGCu -3'
miRNA:   3'- gUGCaaGCAGG-GCUG-----CGGCCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 104824 0.66 0.806946
Target:  5'- gGCGUcgaaCGUCCCGuC-CCGGCUGgaGCg -3'
miRNA:   3'- gUGCAa---GCAGGGCuGcGGCCGGCg-CG- -5'
9060 5' -60.9 NC_002512.2 + 84677 0.66 0.806946
Target:  5'- aCugGUccUCGUCCCGcaGC-CCGGggucgaacuCCGUGCg -3'
miRNA:   3'- -GugCA--AGCAGGGC--UGcGGCC---------GGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 105047 0.66 0.806946
Target:  5'- uCGCGggccUCG-CUCGGCGaCGGCgGCGUg -3'
miRNA:   3'- -GUGCa---AGCaGGGCUGCgGCCGgCGCG- -5'
9060 5' -60.9 NC_002512.2 + 196735 0.66 0.806946
Target:  5'- aCAUGUUCGUUCCGAguCCGuGUCagGCGCc -3'
miRNA:   3'- -GUGCAAGCAGGGCUgcGGC-CGG--CGCG- -5'
9060 5' -60.9 NC_002512.2 + 44667 0.66 0.806946
Target:  5'- aCGCGU---UCCaCGACGCgGGCCacCGCg -3'
miRNA:   3'- -GUGCAagcAGG-GCUGCGgCCGGc-GCG- -5'
9060 5' -60.9 NC_002512.2 + 187548 0.66 0.823043
Target:  5'- cCugGUcCGUCUCGAucUGUCcGUCGCGCg -3'
miRNA:   3'- -GugCAaGCAGGGCU--GCGGcCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 193141 0.66 0.823043
Target:  5'- uCACGgUCGUCCuCGuC-CUGGCCgGCGUc -3'
miRNA:   3'- -GUGCaAGCAGG-GCuGcGGCCGG-CGCG- -5'
9060 5' -60.9 NC_002512.2 + 196626 0.66 0.838543
Target:  5'- --gGUUCG-CCCggGugGCCGacGCCGUGUg -3'
miRNA:   3'- gugCAAGCaGGG--CugCGGC--CGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 90069 0.66 0.806946
Target:  5'- cCACGUccUUGgacaCCCGAccgaggccccCGCCGGCCuggaggguGCGCc -3'
miRNA:   3'- -GUGCA--AGCa---GGGCU----------GCGGCCGG--------CGCG- -5'
9060 5' -60.9 NC_002512.2 + 126484 0.66 0.838543
Target:  5'- uCGCGUcgccCGgaucCCCGGCGuuGGgCGCGa -3'
miRNA:   3'- -GUGCAa---GCa---GGGCUGCggCCgGCGCg -5'
9060 5' -60.9 NC_002512.2 + 114787 0.66 0.815066
Target:  5'- gCACGg-CGUCCCGACGucCCGGCaGaCGa -3'
miRNA:   3'- -GUGCaaGCAGGGCUGC--GGCCGgC-GCg -5'
9060 5' -60.9 NC_002512.2 + 149873 0.66 0.823043
Target:  5'- gACGccUCGU-CCGGCuCCGGCUGcCGCu -3'
miRNA:   3'- gUGCa-AGCAgGGCUGcGGCCGGC-GCG- -5'
9060 5' -60.9 NC_002512.2 + 111498 0.66 0.838543
Target:  5'- gACGgagaGUCCgGAcgucCGCCGGCgguaGCGCc -3'
miRNA:   3'- gUGCaag-CAGGgCU----GCGGCCGg---CGCG- -5'
9060 5' -60.9 NC_002512.2 + 151079 0.66 0.830871
Target:  5'- uGCGgucUCGgUCCG-CGCCGGagaCGUGCa -3'
miRNA:   3'- gUGCa--AGCaGGGCuGCGGCCg--GCGCG- -5'
9060 5' -60.9 NC_002512.2 + 105235 0.66 0.830871
Target:  5'- gGCGUacagCgUGAgCGCCGcGCCGCGCa -3'
miRNA:   3'- gUGCAagcaGgGCU-GCGGC-CGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 211329 0.66 0.830871
Target:  5'- gGCGgucCGggCCCgGGCGCUGGgggaCGCGCg -3'
miRNA:   3'- gUGCaa-GCa-GGG-CUGCGGCCg---GCGCG- -5'
9060 5' -60.9 NC_002512.2 + 160802 0.66 0.834727
Target:  5'- cCACGgcagcaguaccagcCGcCCCGGCaccagcaggcgggcgGCCGGCgGCGCu -3'
miRNA:   3'- -GUGCaa------------GCaGGGCUG---------------CGGCCGgCGCG- -5'
9060 5' -60.9 NC_002512.2 + 60809 0.66 0.806946
Target:  5'- aCGCGgg---CCgCGACGCCGccGCCGCGg -3'
miRNA:   3'- -GUGCaagcaGG-GCUGCGGC--CGGCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.