miRNA display CGI


Results 101 - 120 of 393 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9060 5' -60.9 NC_002512.2 + 67763 0.66 0.823043
Target:  5'- -cCGgggUCGUCuCCGGCGCCggGGUCGuCGg -3'
miRNA:   3'- guGCa--AGCAG-GGCUGCGG--CCGGC-GCg -5'
9060 5' -60.9 NC_002512.2 + 35474 0.66 0.830871
Target:  5'- gGCGUucUCGUacucgaagaCGACGUCGGCCGUcCa -3'
miRNA:   3'- gUGCA--AGCAgg-------GCUGCGGCCGGCGcG- -5'
9060 5' -60.9 NC_002512.2 + 36418 0.66 0.830871
Target:  5'- -uCGUgggccUCGUCCCGGagggcccgcuccCGCCaccggcGGCCGCGg -3'
miRNA:   3'- guGCA-----AGCAGGGCU------------GCGG------CCGGCGCg -5'
9060 5' -60.9 NC_002512.2 + 187388 0.67 0.755609
Target:  5'- uUACGUUC-UCUgGAUGUgGGCCGCuGUa -3'
miRNA:   3'- -GUGCAAGcAGGgCUGCGgCCGGCG-CG- -5'
9060 5' -60.9 NC_002512.2 + 82016 0.67 0.755609
Target:  5'- gGCGagccgUCG-CCCGggucggggucGCGCCGGCgGCGg -3'
miRNA:   3'- gUGCa----AGCaGGGC----------UGCGGCCGgCGCg -5'
9060 5' -60.9 NC_002512.2 + 45939 0.67 0.755609
Target:  5'- aGCGcgCGUCCCGGgagcagaaccaGCCGaGCCGCu- -3'
miRNA:   3'- gUGCaaGCAGGGCUg----------CGGC-CGGCGcg -5'
9060 5' -60.9 NC_002512.2 + 128815 0.67 0.79869
Target:  5'- cCGCGggCGggccCUCGACGCCGGgUuCGCc -3'
miRNA:   3'- -GUGCaaGCa---GGGCUGCGGCCgGcGCG- -5'
9060 5' -60.9 NC_002512.2 + 123131 0.67 0.755609
Target:  5'- gGCGgcCGUCCCggggGACGgggCGGCgGCGCc -3'
miRNA:   3'- gUGCaaGCAGGG----CUGCg--GCCGgCGCG- -5'
9060 5' -60.9 NC_002512.2 + 46720 0.67 0.79869
Target:  5'- gGCGUaCGUCauGGCGgCGGCgGCGg -3'
miRNA:   3'- gUGCAaGCAGggCUGCgGCCGgCGCg -5'
9060 5' -60.9 NC_002512.2 + 51006 0.67 0.781796
Target:  5'- aCGCGUUCGUggagaacaaCCCgcuGACGaCGGaccaCGCGCa -3'
miRNA:   3'- -GUGCAAGCA---------GGG---CUGCgGCCg---GCGCG- -5'
9060 5' -60.9 NC_002512.2 + 45171 0.67 0.764441
Target:  5'- gCGCGUagaagUCGUCCucggaggucuCGACcgggaCCGGCgGCGCg -3'
miRNA:   3'- -GUGCA-----AGCAGG----------GCUGc----GGCCGgCGCG- -5'
9060 5' -60.9 NC_002512.2 + 153281 0.67 0.764441
Target:  5'- gGCGgcccCGgacagacgUCCGACGCCGGCguucaucucgaCGCGCc -3'
miRNA:   3'- gUGCaa--GCa-------GGGCUGCGGCCG-----------GCGCG- -5'
9060 5' -60.9 NC_002512.2 + 139485 0.67 0.773173
Target:  5'- uCACGggcaCGg-CCGGCGCCGGCaagaccucgagCGUGCa -3'
miRNA:   3'- -GUGCaa--GCagGGCUGCGGCCG-----------GCGCG- -5'
9060 5' -60.9 NC_002512.2 + 152360 0.67 0.773173
Target:  5'- gGCGUcUCcgGUCCCGAuCGaCCGGUCGCc- -3'
miRNA:   3'- gUGCA-AG--CAGGGCU-GC-GGCCGGCGcg -5'
9060 5' -60.9 NC_002512.2 + 136186 0.67 0.797857
Target:  5'- gGCGgggUCG-CCgggaucgcguCGACGCCGGCggccuggUGCGCg -3'
miRNA:   3'- gUGCa--AGCaGG----------GCUGCGGCCG-------GCGCG- -5'
9060 5' -60.9 NC_002512.2 + 107475 0.67 0.790304
Target:  5'- gAUGUucaucUCGUCgCCG-CGaCCGGCC-CGCa -3'
miRNA:   3'- gUGCA-----AGCAG-GGCuGC-GGCCGGcGCG- -5'
9060 5' -60.9 NC_002512.2 + 56277 0.67 0.781796
Target:  5'- gGCGgaggCGcUCCCGcuacucgacAUGCUGGCgGCGCc -3'
miRNA:   3'- gUGCaa--GC-AGGGC---------UGCGGCCGgCGCG- -5'
9060 5' -60.9 NC_002512.2 + 117719 0.67 0.781796
Target:  5'- gCGCGUgCGggCUCGAgCGCCGGCuCGcCGUc -3'
miRNA:   3'- -GUGCAaGCa-GGGCU-GCGGCCG-GC-GCG- -5'
9060 5' -60.9 NC_002512.2 + 9121 0.67 0.790304
Target:  5'- cCAUGga---CCCGACGUCGGCCucgacggcccaGCGCu -3'
miRNA:   3'- -GUGCaagcaGGGCUGCGGCCGG-----------CGCG- -5'
9060 5' -60.9 NC_002512.2 + 23545 0.67 0.755609
Target:  5'- uCAUGUUCGccaccaaCCCGACGUgccaccuggcgUGGCCGCuggGCg -3'
miRNA:   3'- -GUGCAAGCa------GGGCUGCG-----------GCCGGCG---CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.