miRNA display CGI


Results 21 - 40 of 393 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9060 5' -60.9 NC_002512.2 + 101609 0.75 0.371754
Target:  5'- gGCGgccgUCGgCCCGGCGCCGGgaCGCGa -3'
miRNA:   3'- gUGCa---AGCaGGGCUGCGGCCg-GCGCg -5'
9060 5' -60.9 NC_002512.2 + 128220 0.75 0.371754
Target:  5'- gACGUagaUCGgCCCGGCGUccgCGGCCGcCGCg -3'
miRNA:   3'- gUGCA---AGCaGGGCUGCG---GCCGGC-GCG- -5'
9060 5' -60.9 NC_002512.2 + 29214 0.75 0.349632
Target:  5'- aCACcUUCuaCCCGaACGCCGGCCGCGg -3'
miRNA:   3'- -GUGcAAGcaGGGC-UGCGGCCGGCGCg -5'
9060 5' -60.9 NC_002512.2 + 100363 0.75 0.3695
Target:  5'- gCACGgcgUCGUCCUGuACGCggcucccgacuuccCGGCCGCGg -3'
miRNA:   3'- -GUGCa--AGCAGGGC-UGCG--------------GCCGGCGCg -5'
9060 5' -60.9 NC_002512.2 + 113715 0.74 0.410688
Target:  5'- --aGUggGUCCCGACGCgGGCgGCGa -3'
miRNA:   3'- gugCAagCAGGGCUGCGgCCGgCGCg -5'
9060 5' -60.9 NC_002512.2 + 207662 0.74 0.394028
Target:  5'- -cCGUgguggCGUCCCGGgcucuccCGCCGGCCgaaGCGCu -3'
miRNA:   3'- guGCAa----GCAGGGCU-------GCGGCCGG---CGCG- -5'
9060 5' -60.9 NC_002512.2 + 92670 0.74 0.418773
Target:  5'- gACGgcCG-CCCG-CGCCGGgCGCGCc -3'
miRNA:   3'- gUGCaaGCaGGGCuGCGGCCgGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 169027 0.74 0.410688
Target:  5'- gGCGggCGUCCgcgagCGGCGCCGGCaucuccucggGCGCg -3'
miRNA:   3'- gUGCaaGCAGG-----GCUGCGGCCGg---------CGCG- -5'
9060 5' -60.9 NC_002512.2 + 129979 0.74 0.401907
Target:  5'- gGCGggCc-CCCGGCGCCcucgacgGGCCGCGCc -3'
miRNA:   3'- gUGCaaGcaGGGCUGCGG-------CCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 103443 0.74 0.4027
Target:  5'- gGCGgcCGcCgCCGuCGCCGGCCGgGCg -3'
miRNA:   3'- gUGCaaGCaG-GGCuGCGGCCGGCgCG- -5'
9060 5' -60.9 NC_002512.2 + 103471 0.74 0.394811
Target:  5'- aCGCGgcucggGUCUCGGCGgCGGCCGCGg -3'
miRNA:   3'- -GUGCaag---CAGGGCUGCgGCCGGCGCg -5'
9060 5' -60.9 NC_002512.2 + 116216 0.74 0.4027
Target:  5'- aACGUcCGaCCCGcgcgcacccucGCgGCCGGCCGCGCc -3'
miRNA:   3'- gUGCAaGCaGGGC-----------UG-CGGCCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 83975 0.74 0.418773
Target:  5'- gGCGgaUG-CCCGGCGCggggCGGUCGCGCa -3'
miRNA:   3'- gUGCaaGCaGGGCUGCG----GCCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 89364 0.73 0.43523
Target:  5'- gGCGgcCGUCCUGGCGCCGuaCGUGg -3'
miRNA:   3'- gUGCaaGCAGGGCUGCGGCcgGCGCg -5'
9060 5' -60.9 NC_002512.2 + 150815 0.73 0.469228
Target:  5'- uCACGggUCGcCgUGACGaCCGcGCCGCGCu -3'
miRNA:   3'- -GUGCa-AGCaGgGCUGC-GGC-CGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 103108 0.73 0.460599
Target:  5'- gCGCGgcacgCGUCgCCGcCGCC-GCCGCGCc -3'
miRNA:   3'- -GUGCaa---GCAG-GGCuGCGGcCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 18127 0.73 0.43523
Target:  5'- cCACG-UCcUCCCGcaGCGCCcgGGCCGCGUc -3'
miRNA:   3'- -GUGCaAGcAGGGC--UGCGG--CCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 50021 0.73 0.443597
Target:  5'- gCACG-UCGUCgUGACGgUGGgCGCGCa -3'
miRNA:   3'- -GUGCaAGCAGgGCUGCgGCCgGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 73350 0.73 0.452054
Target:  5'- uCGCGUacaCGuUCCCGcCGCCGGacccCCGCGCc -3'
miRNA:   3'- -GUGCAa--GC-AGGGCuGCGGCC----GGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 128453 0.73 0.469228
Target:  5'- gGCG-UCG-CCgCGcCGCCGGCCGcCGCu -3'
miRNA:   3'- gUGCaAGCaGG-GCuGCGGCCGGC-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.