miRNA display CGI


Results 81 - 100 of 393 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9060 5' -60.9 NC_002512.2 + 114228 0.71 0.57724
Target:  5'- gGCGgugaugUgGUCCucaucgaCGGCGaCCGGCUGCGCg -3'
miRNA:   3'- gUGCa-----AgCAGG-------GCUGC-GGCCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 133391 0.71 0.531747
Target:  5'- gGCGgUCG-CCCGgaccauggaggGCGagaCGGCCGCGCg -3'
miRNA:   3'- gUGCaAGCaGGGC-----------UGCg--GCCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 92628 0.71 0.540937
Target:  5'- gACGgaCGgcggcCgCCGGCGCCGGgacCCGCGCg -3'
miRNA:   3'- gUGCaaGCa----G-GGCUGCGGCC---GGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 60869 0.7 0.62543
Target:  5'- uCGCGgaCGccgCCCGGauCGCCGaGCCgGCGCg -3'
miRNA:   3'- -GUGCaaGCa--GGGCU--GCGGC-CGG-CGCG- -5'
9060 5' -60.9 NC_002512.2 + 154599 0.7 0.634917
Target:  5'- gGCGgcaUCGUCgCCGcCGCCGccGCCGuCGCc -3'
miRNA:   3'- gUGCa--AGCAG-GGCuGCGGC--CGGC-GCG- -5'
9060 5' -60.9 NC_002512.2 + 87805 0.7 0.62543
Target:  5'- cCGCGUUCGguugcaccCCCaGCGaucccCCGGCCGgGCg -3'
miRNA:   3'- -GUGCAAGCa-------GGGcUGC-----GGCCGGCgCG- -5'
9060 5' -60.9 NC_002512.2 + 199602 0.7 0.615947
Target:  5'- aCGCGggggccUCcUCCaUGGCGCCGGCucCGCGCg -3'
miRNA:   3'- -GUGCa-----AGcAGG-GCUGCGGCCG--GCGCG- -5'
9060 5' -60.9 NC_002512.2 + 157062 0.7 0.634917
Target:  5'- gGCGggCGUCCCGGgGuCCGgggucGCCgGCGCc -3'
miRNA:   3'- gUGCaaGCAGGGCUgC-GGC-----CGG-CGCG- -5'
9060 5' -60.9 NC_002512.2 + 217869 0.7 0.62543
Target:  5'- gGCGUggggagcgCGUCCgaGAuCGgCGGCCGCGUc -3'
miRNA:   3'- gUGCAa-------GCAGGg-CU-GCgGCCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 180411 0.7 0.633968
Target:  5'- uCGCGUagucgaagUCGUCCucggugaCGGCGCCccgGGCgGCGCc -3'
miRNA:   3'- -GUGCA--------AGCAGG-------GCUGCGG---CCGgCGCG- -5'
9060 5' -60.9 NC_002512.2 + 44707 0.7 0.62543
Target:  5'- cCGCGUUCucggagaagaaGUCCUgGACGCCGcGCCGgaGCc -3'
miRNA:   3'- -GUGCAAG-----------CAGGG-CUGCGGC-CGGCg-CG- -5'
9060 5' -60.9 NC_002512.2 + 45325 0.7 0.62543
Target:  5'- cCGCGggUCGgagggCCGucCGCCGGCCcGCGCc -3'
miRNA:   3'- -GUGCa-AGCag---GGCu-GCGGCCGG-CGCG- -5'
9060 5' -60.9 NC_002512.2 + 7690 0.7 0.615947
Target:  5'- gACGaagaaaCGga-CGACGCCGGCCGCGg -3'
miRNA:   3'- gUGCaa----GCaggGCUGCGGCCGGCGCg -5'
9060 5' -60.9 NC_002512.2 + 78517 0.7 0.622584
Target:  5'- gCACGUuuUCGgccggcgCCaucuugaggcaacaUGGCGCCGGCCGgGCc -3'
miRNA:   3'- -GUGCA--AGCa------GG--------------GCUGCGGCCGGCgCG- -5'
9060 5' -60.9 NC_002512.2 + 147769 0.7 0.58476
Target:  5'- gCGCGgcCGUCCCGACuCgCGGCucggaaaaagcuuaCGCGCg -3'
miRNA:   3'- -GUGCaaGCAGGGCUGcG-GCCG--------------GCGCG- -5'
9060 5' -60.9 NC_002512.2 + 92159 0.7 0.62543
Target:  5'- gACGcUCGUCCCuggagaACGCCGGCCaUGUc -3'
miRNA:   3'- gUGCaAGCAGGGc-----UGCGGCCGGcGCG- -5'
9060 5' -60.9 NC_002512.2 + 129971 0.7 0.634917
Target:  5'- aCGCGaUCGaacaCCGccgggaGCGCCGGCgGCGCc -3'
miRNA:   3'- -GUGCaAGCag--GGC------UGCGGCCGgCGCG- -5'
9060 5' -60.9 NC_002512.2 + 3175 0.7 0.634917
Target:  5'- cCGCGgccucccgUCG-CUCGACGCCG-CCGCGg -3'
miRNA:   3'- -GUGCa-------AGCaGGGCUGCGGCcGGCGCg -5'
9060 5' -60.9 NC_002512.2 + 138667 0.7 0.62543
Target:  5'- cCACGUaUCGgcaguaCCUGucguCGCCGGCgUGCGCg -3'
miRNA:   3'- -GUGCA-AGCa-----GGGCu---GCGGCCG-GCGCG- -5'
9060 5' -60.9 NC_002512.2 + 14773 0.7 0.62543
Target:  5'- -cCGgcCGUUCUGGCgGUCGGCCGCGg -3'
miRNA:   3'- guGCaaGCAGGGCUG-CGGCCGGCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.