miRNA display CGI


Results 61 - 80 of 393 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9060 5' -60.9 NC_002512.2 + 145619 0.71 0.529001
Target:  5'- gGCGUUCGgcccgcugCCCgccuuccgcgucgaGAUGCCGGgcCCGCGCu -3'
miRNA:   3'- gUGCAAGCa-------GGG--------------CUGCGGCC--GGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 133391 0.71 0.531747
Target:  5'- gGCGgUCG-CCCGgaccauggaggGCGagaCGGCCGCGCg -3'
miRNA:   3'- gUGCaAGCaGGGC-----------UGCg--GCCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 137979 0.71 0.531747
Target:  5'- uGCGUgcCGggCCCGA-GCgGGCCGUGCg -3'
miRNA:   3'- gUGCAa-GCa-GGGCUgCGgCCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 98090 0.71 0.532663
Target:  5'- gCGCGUUCGgggucuuggucgccuUCCCGccccgcuugccgggGCGCUGGUCGuCGCg -3'
miRNA:   3'- -GUGCAAGC---------------AGGGC--------------UGCGGCCGGC-GCG- -5'
9060 5' -60.9 NC_002512.2 + 12546 0.71 0.540937
Target:  5'- -uCGUgCGUCCCGAugcCGCCGuaCGUGCu -3'
miRNA:   3'- guGCAaGCAGGGCU---GCGGCcgGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 39669 0.71 0.540937
Target:  5'- gACGUggcCGUCCCgGACGaCCGcGCCGC-Cg -3'
miRNA:   3'- gUGCAa--GCAGGG-CUGC-GGC-CGGCGcG- -5'
9060 5' -60.9 NC_002512.2 + 92628 0.71 0.540937
Target:  5'- gACGgaCGgcggcCgCCGGCGCCGGgacCCGCGCg -3'
miRNA:   3'- gUGCaaGCa----G-GGCUGCGGCC---GGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 192587 0.71 0.540937
Target:  5'- aGCGgacCGUCCCGcUGCugCGGCgCGCGCg -3'
miRNA:   3'- gUGCaa-GCAGGGCuGCG--GCCG-GCGCG- -5'
9060 5' -60.9 NC_002512.2 + 118681 0.71 0.540937
Target:  5'- -uCGUcUGUCCCGACGUCGgcGCCGUGg -3'
miRNA:   3'- guGCAaGCAGGGCUGCGGC--CGGCGCg -5'
9060 5' -60.9 NC_002512.2 + 198155 0.71 0.550181
Target:  5'- gCGCGggcCGggUCGGCGCCGGCCG-GCg -3'
miRNA:   3'- -GUGCaa-GCagGGCUGCGGCCGGCgCG- -5'
9060 5' -60.9 NC_002512.2 + 22370 0.71 0.550181
Target:  5'- aCGCGgcccCGUCCuCGuCGUCGGUCGCGg -3'
miRNA:   3'- -GUGCaa--GCAGG-GCuGCGGCCGGCGCg -5'
9060 5' -60.9 NC_002512.2 + 111354 0.71 0.550181
Target:  5'- cCGCGUUCGUuuccCCCgGACGCCGGa-GgGCc -3'
miRNA:   3'- -GUGCAAGCA----GGG-CUGCGGCCggCgCG- -5'
9060 5' -60.9 NC_002512.2 + 222237 0.71 0.559472
Target:  5'- cCGCGUccuUCGUCgCCGugGCgggucucgugaUGGCCuGCGCc -3'
miRNA:   3'- -GUGCA---AGCAG-GGCugCG-----------GCCGG-CGCG- -5'
9060 5' -60.9 NC_002512.2 + 91989 0.71 0.559472
Target:  5'- cCGCGUcCGggucUCCCGcguCGCCGGCgGCGg -3'
miRNA:   3'- -GUGCAaGC----AGGGCu--GCGGCCGgCGCg -5'
9060 5' -60.9 NC_002512.2 + 8693 0.71 0.567871
Target:  5'- gUACGUacUCGggUCCCGuCcacuccgaggucgGUCGGCCGCGCg -3'
miRNA:   3'- -GUGCA--AGC--AGGGCuG-------------CGGCCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 130146 0.71 0.568806
Target:  5'- uCGCGgccgCGgggCCCGGCggcggGCCGGCC-CGCg -3'
miRNA:   3'- -GUGCaa--GCa--GGGCUG-----CGGCCGGcGCG- -5'
9060 5' -60.9 NC_002512.2 + 111261 0.71 0.568806
Target:  5'- aACGUgcacagcaccgUCGUCUCcAUGUCGGCCGcCGCg -3'
miRNA:   3'- gUGCA-----------AGCAGGGcUGCGGCCGGC-GCG- -5'
9060 5' -60.9 NC_002512.2 + 182596 0.71 0.572551
Target:  5'- cCGCGaUCG-CCCGGCaGUuccgcagcggcucggUGGCCGCGCg -3'
miRNA:   3'- -GUGCaAGCaGGGCUG-CG---------------GCCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 114228 0.71 0.57724
Target:  5'- gGCGgugaugUgGUCCucaucgaCGGCGaCCGGCUGCGCg -3'
miRNA:   3'- gUGCa-----AgCAGG-------GCUGC-GGCCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 169539 0.71 0.578179
Target:  5'- aACGg--GUCCCGGCuGcCCGGCgGCGUg -3'
miRNA:   3'- gUGCaagCAGGGCUG-C-GGCCGgCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.