miRNA display CGI


Results 81 - 100 of 393 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9060 5' -60.9 NC_002512.2 + 169539 0.71 0.578179
Target:  5'- aACGg--GUCCCGGCuGcCCGGCgGCGUg -3'
miRNA:   3'- gUGCaagCAGGGCUG-C-GGCCGgCGCG- -5'
9060 5' -60.9 NC_002512.2 + 145351 0.71 0.578179
Target:  5'- cCGCGc-CG-CCCGACGCCGGCUacgaGgGCu -3'
miRNA:   3'- -GUGCaaGCaGGGCUGCGGCCGG----CgCG- -5'
9060 5' -60.9 NC_002512.2 + 104932 0.71 0.578179
Target:  5'- gACGgccuccUCGUCCggcgucggcgCGGCGCCGGCCuCGUg -3'
miRNA:   3'- gUGCa-----AGCAGG----------GCUGCGGCCGGcGCG- -5'
9060 5' -60.9 NC_002512.2 + 147769 0.7 0.58476
Target:  5'- gCGCGgcCGUCCCGACuCgCGGCucggaaaaagcuuaCGCGCg -3'
miRNA:   3'- -GUGCaaGCAGGGCUGcG-GCCG--------------GCGCG- -5'
9060 5' -60.9 NC_002512.2 + 70734 0.7 0.587585
Target:  5'- gACGggagCGcgCCCGGcCGCCucacuuggagcGGCCGCGCu -3'
miRNA:   3'- gUGCaa--GCa-GGGCU-GCGG-----------CCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 83922 0.7 0.587585
Target:  5'- gGCGUccagcagCG-CCCGGCGCauGUCGCGCa -3'
miRNA:   3'- gUGCAa------GCaGGGCUGCGgcCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 95561 0.7 0.587585
Target:  5'- cCGCGgcgaGUCCguCGGCGCCGGCCccgGCGa -3'
miRNA:   3'- -GUGCaag-CAGG--GCUGCGGCCGG---CGCg -5'
9060 5' -60.9 NC_002512.2 + 224874 0.7 0.587585
Target:  5'- cCugGUU--UCCCGccuCGCCGGCCGCc- -3'
miRNA:   3'- -GugCAAgcAGGGCu--GCGGCCGGCGcg -5'
9060 5' -60.9 NC_002512.2 + 118073 0.7 0.587585
Target:  5'- cCGCGgagggggCGgCuCCGGCGCCGGCggcgacCGCGCg -3'
miRNA:   3'- -GUGCaa-----GCaG-GGCUGCGGCCG------GCGCG- -5'
9060 5' -60.9 NC_002512.2 + 117415 0.7 0.597019
Target:  5'- aCACGcuggagUCgGUgCUGACGCUGGCCGUGa -3'
miRNA:   3'- -GUGCa-----AG-CAgGGCUGCGGCCGGCGCg -5'
9060 5' -60.9 NC_002512.2 + 195337 0.7 0.597019
Target:  5'- aCAUGUgCGUgaCCCGGCGCCGGgaaccCCGgGUg -3'
miRNA:   3'- -GUGCAaGCA--GGGCUGCGGCC-----GGCgCG- -5'
9060 5' -60.9 NC_002512.2 + 227081 0.7 0.597019
Target:  5'- cCGCGccggGUCCCGccggcCGCCGGCCGgGUc -3'
miRNA:   3'- -GUGCaag-CAGGGCu----GCGGCCGGCgCG- -5'
9060 5' -60.9 NC_002512.2 + 83695 0.7 0.597019
Target:  5'- gACGgucgUCGagCCCagGGCGaCCGuGCCGCGCg -3'
miRNA:   3'- gUGCa---AGCa-GGG--CUGC-GGC-CGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 82700 0.7 0.597019
Target:  5'- gGCGUcCGUgCgCGGCGCgGGCcCGCGUu -3'
miRNA:   3'- gUGCAaGCAgG-GCUGCGgCCG-GCGCG- -5'
9060 5' -60.9 NC_002512.2 + 106972 0.7 0.605528
Target:  5'- uCGCGcUCGUCCCcguagaaggccggGACGCCcgGGCCGgGg -3'
miRNA:   3'- -GUGCaAGCAGGG-------------CUGCGG--CCGGCgCg -5'
9060 5' -60.9 NC_002512.2 + 154697 0.7 0.606475
Target:  5'- aGCGgcCGU-CCGGCGUCGaGCgGCGCg -3'
miRNA:   3'- gUGCaaGCAgGGCUGCGGC-CGgCGCG- -5'
9060 5' -60.9 NC_002512.2 + 171918 0.7 0.606475
Target:  5'- aUAgGUUCGUCgCCcucuucgccCGCCGcGCCGCGCc -3'
miRNA:   3'- -GUgCAAGCAG-GGcu-------GCGGC-CGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 7690 0.7 0.615947
Target:  5'- gACGaagaaaCGga-CGACGCCGGCCGCGg -3'
miRNA:   3'- gUGCaa----GCaggGCUGCGGCCGGCGCg -5'
9060 5' -60.9 NC_002512.2 + 199602 0.7 0.615947
Target:  5'- aCGCGggggccUCcUCCaUGGCGCCGGCucCGCGCg -3'
miRNA:   3'- -GUGCa-----AGcAGG-GCUGCGGCCG--GCGCG- -5'
9060 5' -60.9 NC_002512.2 + 119363 0.7 0.615947
Target:  5'- uCACGgcgacUCGcUCgCGGCGCgCGGCCGCa- -3'
miRNA:   3'- -GUGCa----AGC-AGgGCUGCG-GCCGGCGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.