miRNA display CGI


Results 41 - 60 of 393 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9060 5' -60.9 NC_002512.2 + 145906 0.66 0.838543
Target:  5'- gCGCGacCGcCCCG-CGCCGGgcauCCGcCGCc -3'
miRNA:   3'- -GUGCaaGCaGGGCuGCGGCC----GGC-GCG- -5'
9060 5' -60.9 NC_002512.2 + 149060 0.66 0.838543
Target:  5'- cUACGgggccCGcUCcgCCGACGCCGaGgCGCGCg -3'
miRNA:   3'- -GUGCaa---GC-AG--GGCUGCGGC-CgGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 196626 0.66 0.838543
Target:  5'- --gGUUCG-CCCggGugGCCGacGCCGUGUg -3'
miRNA:   3'- gugCAAGCaGGG--CugCGGC--CGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 111498 0.66 0.838543
Target:  5'- gACGgagaGUCCgGAcgucCGCCGGCgguaGCGCc -3'
miRNA:   3'- gUGCaag-CAGGgCU----GCGGCCGg---CGCG- -5'
9060 5' -60.9 NC_002512.2 + 205587 0.66 0.838543
Target:  5'- aCGCaGUUCGcCCCGcCGCUGucCCGCGg -3'
miRNA:   3'- -GUG-CAAGCaGGGCuGCGGCc-GGCGCg -5'
9060 5' -60.9 NC_002512.2 + 184682 0.66 0.838543
Target:  5'- gGCGgcCGUCCgCGcCGCCGGUCcCGg -3'
miRNA:   3'- gUGCaaGCAGG-GCuGCGGCCGGcGCg -5'
9060 5' -60.9 NC_002512.2 + 34833 0.66 0.838543
Target:  5'- gACGacCcUCCCGccCGCgGGCCGCGg -3'
miRNA:   3'- gUGCaaGcAGGGCu-GCGgCCGGCGCg -5'
9060 5' -60.9 NC_002512.2 + 126484 0.66 0.838543
Target:  5'- uCGCGUcgccCGgaucCCCGGCGuuGGgCGCGa -3'
miRNA:   3'- -GUGCAa---GCa---GGGCUGCggCCgGCGCg -5'
9060 5' -60.9 NC_002512.2 + 134594 0.66 0.837022
Target:  5'- gGCGccUCGUccgccgacgggaaCCCGAcccCGCCGuucaggaGCCGCGCg -3'
miRNA:   3'- gUGCa-AGCA-------------GGGCU---GCGGC-------CGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 78430 0.66 0.836258
Target:  5'- gCGCGUuuUCGgccggcgCCaucuugagccaacaUGGCGCCGGCCGgacCGCg -3'
miRNA:   3'- -GUGCA--AGCa------GG--------------GCUGCGGCCGGC---GCG- -5'
9060 5' -60.9 NC_002512.2 + 160802 0.66 0.834727
Target:  5'- cCACGgcagcaguaccagcCGcCCCGGCaccagcaggcgggcgGCCGGCgGCGCu -3'
miRNA:   3'- -GUGCaa------------GCaGGGCUG---------------CGGCCGgCGCG- -5'
9060 5' -60.9 NC_002512.2 + 99607 0.66 0.830871
Target:  5'- aCAUGaccgUCGUguaCgUGAUGCCGGCCGCc- -3'
miRNA:   3'- -GUGCa---AGCA---GgGCUGCGGCCGGCGcg -5'
9060 5' -60.9 NC_002512.2 + 151079 0.66 0.830871
Target:  5'- uGCGgucUCGgUCCG-CGCCGGagaCGUGCa -3'
miRNA:   3'- gUGCa--AGCaGGGCuGCGGCCg--GCGCG- -5'
9060 5' -60.9 NC_002512.2 + 110642 0.66 0.830871
Target:  5'- gCACGUaCGUCaucaccaccuCCGACGCCaGGuuG-GCg -3'
miRNA:   3'- -GUGCAaGCAG----------GGCUGCGG-CCggCgCG- -5'
9060 5' -60.9 NC_002512.2 + 36418 0.66 0.830871
Target:  5'- -uCGUgggccUCGUCCCGGagggcccgcuccCGCCaccggcGGCCGCGg -3'
miRNA:   3'- guGCA-----AGCAGGGCU------------GCGG------CCGGCGCg -5'
9060 5' -60.9 NC_002512.2 + 35474 0.66 0.830871
Target:  5'- gGCGUucUCGUacucgaagaCGACGUCGGCCGUcCa -3'
miRNA:   3'- gUGCA--AGCAgg-------GCUGCGGCCGGCGcG- -5'
9060 5' -60.9 NC_002512.2 + 211329 0.66 0.830871
Target:  5'- gGCGgucCGggCCCgGGCGCUGGgggaCGCGCg -3'
miRNA:   3'- gUGCaa-GCa-GGG-CUGCGGCCg---GCGCG- -5'
9060 5' -60.9 NC_002512.2 + 133341 0.66 0.830871
Target:  5'- gGCGUcCGggaucCCCGGCcCCGGCUcacaccgccgGCGCg -3'
miRNA:   3'- gUGCAaGCa----GGGCUGcGGCCGG----------CGCG- -5'
9060 5' -60.9 NC_002512.2 + 48773 0.66 0.830871
Target:  5'- gACGgacgUGUCCCaGACGCUGaGgCGgGCg -3'
miRNA:   3'- gUGCaa--GCAGGG-CUGCGGC-CgGCgCG- -5'
9060 5' -60.9 NC_002512.2 + 31707 0.66 0.830871
Target:  5'- -cUGUUCG--CCGAcguggaggucCGCCGGCCgGCGCc -3'
miRNA:   3'- guGCAAGCagGGCU----------GCGGCCGG-CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.