miRNA display CGI


Results 61 - 80 of 393 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9060 5' -60.9 NC_002512.2 + 31707 0.66 0.830871
Target:  5'- -cUGUUCG--CCGAcguggaggucCGCCGGCCgGCGCc -3'
miRNA:   3'- guGCAAGCagGGCU----------GCGGCCGG-CGCG- -5'
9060 5' -60.9 NC_002512.2 + 36418 0.66 0.830871
Target:  5'- -uCGUgggccUCGUCCCGGagggcccgcuccCGCCaccggcGGCCGCGg -3'
miRNA:   3'- guGCA-----AGCAGGGCU------------GCGG------CCGGCGCg -5'
9060 5' -60.9 NC_002512.2 + 77691 0.66 0.826192
Target:  5'- aCACG-UCGUCCgGACGCgGucaagugaacgagacGCCGCcCa -3'
miRNA:   3'- -GUGCaAGCAGGgCUGCGgC---------------CGGCGcG- -5'
9060 5' -60.9 NC_002512.2 + 196732 0.66 0.823043
Target:  5'- cCGCuucgUCGUCCUGuacggcuCGaCCGGCgGCGUg -3'
miRNA:   3'- -GUGca--AGCAGGGCu------GC-GGCCGgCGCG- -5'
9060 5' -60.9 NC_002512.2 + 78797 0.66 0.823043
Target:  5'- aCACGUgcaCGUCuCCGGCGC-GGaCCGagacCGCa -3'
miRNA:   3'- -GUGCAa--GCAG-GGCUGCGgCC-GGC----GCG- -5'
9060 5' -60.9 NC_002512.2 + 135008 0.66 0.823043
Target:  5'- -cCGUUCGUCCUGGaggauucggGCCGGCgGaCGg -3'
miRNA:   3'- guGCAAGCAGGGCUg--------CGGCCGgC-GCg -5'
9060 5' -60.9 NC_002512.2 + 187548 0.66 0.823043
Target:  5'- cCugGUcCGUCUCGAucUGUCcGUCGCGCg -3'
miRNA:   3'- -GugCAaGCAGGGCU--GCGGcCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 193141 0.66 0.823043
Target:  5'- uCACGgUCGUCCuCGuC-CUGGCCgGCGUc -3'
miRNA:   3'- -GUGCaAGCAGG-GCuGcGGCCGG-CGCG- -5'
9060 5' -60.9 NC_002512.2 + 149873 0.66 0.823043
Target:  5'- gACGccUCGU-CCGGCuCCGGCUGcCGCu -3'
miRNA:   3'- gUGCa-AGCAgGGCUGcGGCCGGC-GCG- -5'
9060 5' -60.9 NC_002512.2 + 58027 0.66 0.823043
Target:  5'- gGCGUUcCGcCCCcuC-CCGGCCGCGg -3'
miRNA:   3'- gUGCAA-GCaGGGcuGcGGCCGGCGCg -5'
9060 5' -60.9 NC_002512.2 + 67763 0.66 0.823043
Target:  5'- -cCGgggUCGUCuCCGGCGCCggGGUCGuCGg -3'
miRNA:   3'- guGCa--AGCAG-GGCUGCGG--CCGGC-GCg -5'
9060 5' -60.9 NC_002512.2 + 99598 0.66 0.823043
Target:  5'- gUACGgcaCGUCCCGG-GCC--CCGCGCu -3'
miRNA:   3'- -GUGCaa-GCAGGGCUgCGGccGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 154926 0.66 0.821459
Target:  5'- aACGUgggcggaccgcucUCGUCCCGuCGCucucccgCGGuCCGCGa -3'
miRNA:   3'- gUGCA-------------AGCAGGGCuGCG-------GCC-GGCGCg -5'
9060 5' -60.9 NC_002512.2 + 97197 0.66 0.815066
Target:  5'- gACGccCGUCUgCGGCgGCgGGCCGgGCg -3'
miRNA:   3'- gUGCaaGCAGG-GCUG-CGgCCGGCgCG- -5'
9060 5' -60.9 NC_002512.2 + 196429 0.66 0.815066
Target:  5'- gAUGUUCGUCCC-ACGaCCGGagauCGCa- -3'
miRNA:   3'- gUGCAAGCAGGGcUGC-GGCCg---GCGcg -5'
9060 5' -60.9 NC_002512.2 + 147926 0.66 0.815066
Target:  5'- aGCGUuuUCGUCuUCGuCGgCGGCCGC-Cg -3'
miRNA:   3'- gUGCA--AGCAG-GGCuGCgGCCGGCGcG- -5'
9060 5' -60.9 NC_002512.2 + 82834 0.66 0.815066
Target:  5'- aACGU---UCCCGcC-CCGGuCCGCGCg -3'
miRNA:   3'- gUGCAagcAGGGCuGcGGCC-GGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 35258 0.66 0.815066
Target:  5'- gACGggCagGUCCCccgcGGCGaCGGCCGCGg -3'
miRNA:   3'- gUGCaaG--CAGGG----CUGCgGCCGGCGCg -5'
9060 5' -60.9 NC_002512.2 + 21286 0.66 0.815066
Target:  5'- gCACGgaaccucgaccUCGUCCCGGa-CCcGCUGCGCg -3'
miRNA:   3'- -GUGCa----------AGCAGGGCUgcGGcCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 205037 0.66 0.815066
Target:  5'- cCGCGUcCGcCgCCGA--CCGGCCGCGg -3'
miRNA:   3'- -GUGCAaGCaG-GGCUgcGGCCGGCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.