miRNA display CGI


Results 81 - 100 of 393 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9060 5' -60.9 NC_002512.2 + 131781 0.66 0.815066
Target:  5'- gACGaggUCGUCCCG-CGCCGuCCcCGUc -3'
miRNA:   3'- gUGCa--AGCAGGGCuGCGGCcGGcGCG- -5'
9060 5' -60.9 NC_002512.2 + 114787 0.66 0.815066
Target:  5'- gCACGg-CGUCCCGACGucCCGGCaGaCGa -3'
miRNA:   3'- -GUGCaaGCAGGGCUGC--GGCCGgC-GCg -5'
9060 5' -60.9 NC_002512.2 + 225031 0.66 0.815066
Target:  5'- gCACGcggCGaacCCCG-CGauGGCCGCGCu -3'
miRNA:   3'- -GUGCaa-GCa--GGGCuGCggCCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 92223 0.66 0.815066
Target:  5'- uCGCaGUUCGUgCCCGACGaCCGGgacucggacgaCCG-GCu -3'
miRNA:   3'- -GUG-CAAGCA-GGGCUGC-GGCC-----------GGCgCG- -5'
9060 5' -60.9 NC_002512.2 + 49503 0.66 0.81426
Target:  5'- aGCgGUUCGUCCCcccgcagagcaucGGCGCC--CUGCGCg -3'
miRNA:   3'- gUG-CAAGCAGGG-------------CUGCGGccGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 17047 0.66 0.81426
Target:  5'- gACGgaCGgcgCCCG-CGCCcaaccccGGCgGCGCg -3'
miRNA:   3'- gUGCaaGCa--GGGCuGCGG-------CCGgCGCG- -5'
9060 5' -60.9 NC_002512.2 + 84317 0.66 0.81426
Target:  5'- uGCGgcgCGUCgCG-CGCCGcagcgucGCCGCGUc -3'
miRNA:   3'- gUGCaa-GCAGgGCuGCGGC-------CGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 191737 0.66 0.806946
Target:  5'- cCGCGUcggUCGgggugUCCGugGCCGuccucGUCGUGCu -3'
miRNA:   3'- -GUGCA---AGCa----GGGCugCGGC-----CGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 90069 0.66 0.806946
Target:  5'- cCACGUccUUGgacaCCCGAccgaggccccCGCCGGCCuggaggguGCGCc -3'
miRNA:   3'- -GUGCA--AGCa---GGGCU----------GCGGCCGG--------CGCG- -5'
9060 5' -60.9 NC_002512.2 + 73699 0.66 0.806946
Target:  5'- gACGa-CGUCCaUGACcaugaGCUGGUCGCGCu -3'
miRNA:   3'- gUGCaaGCAGG-GCUG-----CGGCCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 104824 0.66 0.806946
Target:  5'- gGCGUcgaaCGUCCCGuC-CCGGCUGgaGCg -3'
miRNA:   3'- gUGCAa---GCAGGGCuGcGGCCGGCg-CG- -5'
9060 5' -60.9 NC_002512.2 + 84677 0.66 0.806946
Target:  5'- aCugGUccUCGUCCCGcaGC-CCGGggucgaacuCCGUGCg -3'
miRNA:   3'- -GugCA--AGCAGGGC--UGcGGCC---------GGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 105047 0.66 0.806946
Target:  5'- uCGCGggccUCG-CUCGGCGaCGGCgGCGUg -3'
miRNA:   3'- -GUGCa---AGCaGGGCUGCgGCCGgCGCG- -5'
9060 5' -60.9 NC_002512.2 + 196735 0.66 0.806946
Target:  5'- aCAUGUUCGUUCCGAguCCGuGUCagGCGCc -3'
miRNA:   3'- -GUGCAAGCAGGGCUgcGGC-CGG--CGCG- -5'
9060 5' -60.9 NC_002512.2 + 44667 0.66 0.806946
Target:  5'- aCGCGU---UCCaCGACGCgGGCCacCGCg -3'
miRNA:   3'- -GUGCAagcAGG-GCUGCGgCCGGc-GCG- -5'
9060 5' -60.9 NC_002512.2 + 60809 0.66 0.806946
Target:  5'- aCGCGgg---CCgCGACGCCGccGCCGCGg -3'
miRNA:   3'- -GUGCaagcaGG-GCUGCGGC--CGGCGCg -5'
9060 5' -60.9 NC_002512.2 + 148521 0.66 0.806946
Target:  5'- gGCGgcCGccgCCCGcC-CCGGCCGCGa -3'
miRNA:   3'- gUGCaaGCa--GGGCuGcGGCCGGCGCg -5'
9060 5' -60.9 NC_002512.2 + 202112 0.66 0.806946
Target:  5'- cCGCGUccUCGUCagcuggUGGCGCCggucucGGCCGcCGCc -3'
miRNA:   3'- -GUGCA--AGCAGg-----GCUGCGG------CCGGC-GCG- -5'
9060 5' -60.9 NC_002512.2 + 158892 0.66 0.806946
Target:  5'- -cCGUccuUCGUCCCGuCcUCGGUCGCGg -3'
miRNA:   3'- guGCA---AGCAGGGCuGcGGCCGGCGCg -5'
9060 5' -60.9 NC_002512.2 + 81781 0.66 0.806946
Target:  5'- cCGCc-UCGUCUuCGGCGCCGccGCCGcCGCc -3'
miRNA:   3'- -GUGcaAGCAGG-GCUGCGGC--CGGC-GCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.