miRNA display CGI


Results 21 - 40 of 393 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9060 5' -60.9 NC_002512.2 + 13142 0.66 0.846055
Target:  5'- -uCGUUCGaCCgGGCGCucgCGGaCCuGCGCg -3'
miRNA:   3'- guGCAAGCaGGgCUGCG---GCC-GG-CGCG- -5'
9060 5' -60.9 NC_002512.2 + 14773 0.7 0.62543
Target:  5'- -cCGgcCGUUCUGGCgGUCGGCCGCGg -3'
miRNA:   3'- guGCaaGCAGGGCUG-CGGCCGGCGCg -5'
9060 5' -60.9 NC_002512.2 + 16983 0.72 0.504533
Target:  5'- -cCGUUCcUCCCGGCGCCgacucgguccauGGCCGcCGUc -3'
miRNA:   3'- guGCAAGcAGGGCUGCGG------------CCGGC-GCG- -5'
9060 5' -60.9 NC_002512.2 + 17047 0.66 0.81426
Target:  5'- gACGgaCGgcgCCCG-CGCCcaaccccGGCgGCGCg -3'
miRNA:   3'- gUGCaaGCa--GGGCuGCGG-------CCGgCGCG- -5'
9060 5' -60.9 NC_002512.2 + 17481 0.66 0.8534
Target:  5'- cCGCccgUCGUCCU--CGUCGGCCGCc- -3'
miRNA:   3'- -GUGca-AGCAGGGcuGCGGCCGGCGcg -5'
9060 5' -60.9 NC_002512.2 + 17638 0.68 0.73495
Target:  5'- -uCGUagaaGUCCaCGugGCCGGCgaacaugucgucccCGCGCa -3'
miRNA:   3'- guGCAag--CAGG-GCugCGGCCG--------------GCGCG- -5'
9060 5' -60.9 NC_002512.2 + 17898 0.68 0.746683
Target:  5'- gGCGgcggCGgcCCCGAgGacgaCGGCCGCGUc -3'
miRNA:   3'- gUGCaa--GCa-GGGCUgCg---GCCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 18127 0.73 0.43523
Target:  5'- cCACG-UCcUCCCGcaGCGCCcgGGCCGCGUc -3'
miRNA:   3'- -GUGCaAGcAGGGC--UGCGG--CCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 18546 0.68 0.716654
Target:  5'- cCGCGcgCGUCCCccaGCGCCcgGGCCcggaccgccacgauGCGCu -3'
miRNA:   3'- -GUGCaaGCAGGGc--UGCGG--CCGG--------------CGCG- -5'
9060 5' -60.9 NC_002512.2 + 20257 0.66 0.8534
Target:  5'- -cCGUcgUCGUCCU--CGuCCGGCCGCa- -3'
miRNA:   3'- guGCA--AGCAGGGcuGC-GGCCGGCGcg -5'
9060 5' -60.9 NC_002512.2 + 21286 0.66 0.815066
Target:  5'- gCACGgaaccucgaccUCGUCCCGGa-CCcGCUGCGCg -3'
miRNA:   3'- -GUGCa----------AGCAGGGCUgcGGcCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 21420 0.68 0.745785
Target:  5'- uCGCGUcgUCGuaguccgccaUCCCGACGUCcgacucgaucgggGGCCgGCGCc -3'
miRNA:   3'- -GUGCA--AGC----------AGGGCUGCGG-------------CCGG-CGCG- -5'
9060 5' -60.9 NC_002512.2 + 22370 0.71 0.550181
Target:  5'- aCGCGgcccCGUCCuCGuCGUCGGUCGCGg -3'
miRNA:   3'- -GUGCaa--GCAGG-GCuGCGGCCGGCGCg -5'
9060 5' -60.9 NC_002512.2 + 23545 0.67 0.755609
Target:  5'- uCAUGUUCGccaccaaCCCGACGUgccaccuggcgUGGCCGCuggGCg -3'
miRNA:   3'- -GUGCAAGCa------GGGCUGCG-----------GCCGGCG---CG- -5'
9060 5' -60.9 NC_002512.2 + 23935 0.67 0.773173
Target:  5'- aCGCGggCGaCCUGAgGC--GCCGCGCg -3'
miRNA:   3'- -GUGCaaGCaGGGCUgCGgcCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 25106 0.69 0.690634
Target:  5'- gGCGUcuccuucccccggUCGUCCCcGCGCCccaGGCCGgGa -3'
miRNA:   3'- gUGCA-------------AGCAGGGcUGCGG---CCGGCgCg -5'
9060 5' -60.9 NC_002512.2 + 27952 0.68 0.736764
Target:  5'- cCACGUaccCGggCCCGuCGCCgaugggcGGCCGgGCg -3'
miRNA:   3'- -GUGCAa--GCa-GGGCuGCGG-------CCGGCgCG- -5'
9060 5' -60.9 NC_002512.2 + 28541 0.67 0.755609
Target:  5'- cCGCcgcCG-CCCGAUGUCGGCCaCGCu -3'
miRNA:   3'- -GUGcaaGCaGGGCUGCGGCCGGcGCG- -5'
9060 5' -60.9 NC_002512.2 + 29214 0.75 0.349632
Target:  5'- aCACcUUCuaCCCGaACGCCGGCCGCGg -3'
miRNA:   3'- -GUGcAAGcaGGGC-UGCGGCCGGCGCg -5'
9060 5' -60.9 NC_002512.2 + 29890 0.77 0.252819
Target:  5'- gCACGUgggccgcUCGUCCC--CGCCGGgCGCGCg -3'
miRNA:   3'- -GUGCA-------AGCAGGGcuGCGGCCgGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.