miRNA display CGI


Results 41 - 60 of 393 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9060 5' -60.9 NC_002512.2 + 31642 0.66 0.846055
Target:  5'- aCAUGgaggcCGUCCCGgacgGCGCgggcgCGGCCGUGg -3'
miRNA:   3'- -GUGCaa---GCAGGGC----UGCG-----GCCGGCGCg -5'
9060 5' -60.9 NC_002512.2 + 31707 0.66 0.830871
Target:  5'- -cUGUUCG--CCGAcguggaggucCGCCGGCCgGCGCc -3'
miRNA:   3'- guGCAAGCagGGCU----------GCGGCCGG-CGCG- -5'
9060 5' -60.9 NC_002512.2 + 33452 0.68 0.710188
Target:  5'- cCAUGgcccCGaccucUCCCGAC-CCGGCCGcCGCc -3'
miRNA:   3'- -GUGCaa--GC-----AGGGCUGcGGCCGGC-GCG- -5'
9060 5' -60.9 NC_002512.2 + 33508 0.72 0.522613
Target:  5'- cCGCGg-CGUCCCGAagugaGcCCGGCCG-GCg -3'
miRNA:   3'- -GUGCaaGCAGGGCUg----C-GGCCGGCgCG- -5'
9060 5' -60.9 NC_002512.2 + 34124 0.68 0.719415
Target:  5'- uCACGUUgGUCCCcagGAU-CCGGCCGaCGa -3'
miRNA:   3'- -GUGCAAgCAGGG---CUGcGGCCGGC-GCg -5'
9060 5' -60.9 NC_002512.2 + 34833 0.66 0.838543
Target:  5'- gACGacCcUCCCGccCGCgGGCCGCGg -3'
miRNA:   3'- gUGCaaGcAGGGCu-GCGgCCGGCGCg -5'
9060 5' -60.9 NC_002512.2 + 35258 0.66 0.815066
Target:  5'- gACGggCagGUCCCccgcGGCGaCGGCCGCGg -3'
miRNA:   3'- gUGCaaG--CAGGG----CUGCgGCCGGCGCg -5'
9060 5' -60.9 NC_002512.2 + 35474 0.66 0.830871
Target:  5'- gGCGUucUCGUacucgaagaCGACGUCGGCCGUcCa -3'
miRNA:   3'- gUGCA--AGCAgg-------GCUGCGGCCGGCGcG- -5'
9060 5' -60.9 NC_002512.2 + 36418 0.66 0.830871
Target:  5'- -uCGUgggccUCGUCCCGGagggcccgcuccCGCCaccggcGGCCGCGg -3'
miRNA:   3'- guGCA-----AGCAGGGCU------------GCGG------CCGGCGCg -5'
9060 5' -60.9 NC_002512.2 + 38851 0.66 0.8534
Target:  5'- cCACGUgcgccgCGcCCCGccuCGCaggcaccuCGGuCCGCGCg -3'
miRNA:   3'- -GUGCAa-----GCaGGGCu--GCG--------GCC-GGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 39669 0.71 0.540937
Target:  5'- gACGUggcCGUCCCgGACGaCCGcGCCGC-Cg -3'
miRNA:   3'- gUGCAa--GCAGGG-CUGC-GGC-CGGCGcG- -5'
9060 5' -60.9 NC_002512.2 + 40244 0.69 0.682194
Target:  5'- -uCGgcgCGUCCCGACgaaGCCGaCCGCGa -3'
miRNA:   3'- guGCaa-GCAGGGCUG---CGGCcGGCGCg -5'
9060 5' -60.9 NC_002512.2 + 40294 0.69 0.663341
Target:  5'- gCACGaacgUCGUCCCGAgGacCCGGCgGCcCg -3'
miRNA:   3'- -GUGCa---AGCAGGGCUgC--GGCCGgCGcG- -5'
9060 5' -60.9 NC_002512.2 + 44667 0.66 0.806946
Target:  5'- aCGCGU---UCCaCGACGCgGGCCacCGCg -3'
miRNA:   3'- -GUGCAagcAGG-GCUGCGgCCGGc-GCG- -5'
9060 5' -60.9 NC_002512.2 + 44707 0.7 0.62543
Target:  5'- cCGCGUUCucggagaagaaGUCCUgGACGCCGcGCCGgaGCc -3'
miRNA:   3'- -GUGCAAG-----------CAGGG-CUGCGGC-CGGCg-CG- -5'
9060 5' -60.9 NC_002512.2 + 45171 0.67 0.764441
Target:  5'- gCGCGUagaagUCGUCCucggaggucuCGACcgggaCCGGCgGCGCg -3'
miRNA:   3'- -GUGCA-----AGCAGG----------GCUGc----GGCCGgCGCG- -5'
9060 5' -60.9 NC_002512.2 + 45325 0.7 0.62543
Target:  5'- cCGCGggUCGgagggCCGucCGCCGGCCcGCGCc -3'
miRNA:   3'- -GUGCa-AGCag---GGCu-GCGGCCGG-CGCG- -5'
9060 5' -60.9 NC_002512.2 + 45413 0.73 0.426954
Target:  5'- uGCGggCGcUCgacggCGGCGCCGGCCGCGg -3'
miRNA:   3'- gUGCaaGC-AGg----GCUGCGGCCGGCGCg -5'
9060 5' -60.9 NC_002512.2 + 45442 0.69 0.672781
Target:  5'- gGCGacUCccugUCCGACGCCGGCgGCGg -3'
miRNA:   3'- gUGCa-AGca--GGGCUGCGGCCGgCGCg -5'
9060 5' -60.9 NC_002512.2 + 45939 0.67 0.755609
Target:  5'- aGCGcgCGUCCCGGgagcagaaccaGCCGaGCCGCu- -3'
miRNA:   3'- gUGCaaGCAGGGCUg----------CGGC-CGGCGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.