miRNA display CGI


Results 61 - 80 of 393 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9060 5' -60.9 NC_002512.2 + 46443 0.77 0.270726
Target:  5'- aACGg-CGUCCUGAcCGUgGGCCGCGCu -3'
miRNA:   3'- gUGCaaGCAGGGCU-GCGgCCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 46720 0.67 0.79869
Target:  5'- gGCGUaCGUCauGGCGgCGGCgGCGg -3'
miRNA:   3'- gUGCAaGCAGggCUGCgGCCGgCGCg -5'
9060 5' -60.9 NC_002512.2 + 47620 0.66 0.846055
Target:  5'- gACGUgcaguucccCGUCCUGGCGCCGucGCUGUcccuGCu -3'
miRNA:   3'- gUGCAa--------GCAGGGCUGCGGC--CGGCG----CG- -5'
9060 5' -60.9 NC_002512.2 + 48712 0.68 0.700904
Target:  5'- aCGCGUUCGacUCCUaccugcuggagGAC-CUGGCCGCGg -3'
miRNA:   3'- -GUGCAAGC--AGGG-----------CUGcGGCCGGCGCg -5'
9060 5' -60.9 NC_002512.2 + 48773 0.66 0.830871
Target:  5'- gACGgacgUGUCCCaGACGCUGaGgCGgGCg -3'
miRNA:   3'- gUGCaa--GCAGGG-CUGCGGC-CgGCgCG- -5'
9060 5' -60.9 NC_002512.2 + 49503 0.66 0.81426
Target:  5'- aGCgGUUCGUCCCcccgcagagcaucGGCGCC--CUGCGCg -3'
miRNA:   3'- gUG-CAAGCAGGG-------------CUGCGGccGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 50021 0.73 0.443597
Target:  5'- gCACG-UCGUCgUGACGgUGGgCGCGCa -3'
miRNA:   3'- -GUGCaAGCAGgGCUGCgGCCgGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 50445 0.78 0.247806
Target:  5'- -cCGgaUGUCCagaaGACGCCGGCCGCGa -3'
miRNA:   3'- guGCaaGCAGGg---CUGCGGCCGGCGCg -5'
9060 5' -60.9 NC_002512.2 + 51006 0.67 0.781796
Target:  5'- aCGCGUUCGUggagaacaaCCCgcuGACGaCGGaccaCGCGCa -3'
miRNA:   3'- -GUGCAAGCA---------GGG---CUGCgGCCg---GCGCG- -5'
9060 5' -60.9 NC_002512.2 + 56277 0.67 0.781796
Target:  5'- gGCGgaggCGcUCCCGcuacucgacAUGCUGGCgGCGCc -3'
miRNA:   3'- gUGCaa--GC-AGGGC---------UGCGGCCGgCGCG- -5'
9060 5' -60.9 NC_002512.2 + 57232 0.75 0.349632
Target:  5'- aCGCGggCGUCCC--CGCaGGCCGCGUa -3'
miRNA:   3'- -GUGCaaGCAGGGcuGCGgCCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 58027 0.66 0.823043
Target:  5'- gGCGUUcCGcCCCcuC-CCGGCCGCGg -3'
miRNA:   3'- gUGCAA-GCaGGGcuGcGGCCGGCGCg -5'
9060 5' -60.9 NC_002512.2 + 60809 0.66 0.806946
Target:  5'- aCGCGgg---CCgCGACGCCGccGCCGCGg -3'
miRNA:   3'- -GUGCaagcaGG-GCUGCGGC--CGGCGCg -5'
9060 5' -60.9 NC_002512.2 + 60869 0.7 0.62543
Target:  5'- uCGCGgaCGccgCCCGGauCGCCGaGCCgGCGCg -3'
miRNA:   3'- -GUGCaaGCa--GGGCU--GCGGC-CGG-CGCG- -5'
9060 5' -60.9 NC_002512.2 + 64097 0.68 0.728579
Target:  5'- uGCGUUCGUaugCgCGGuCGCUGGCCucGUGCu -3'
miRNA:   3'- gUGCAAGCA---GgGCU-GCGGCCGG--CGCG- -5'
9060 5' -60.9 NC_002512.2 + 67763 0.66 0.823043
Target:  5'- -cCGgggUCGUCuCCGGCGCCggGGUCGuCGg -3'
miRNA:   3'- guGCa--AGCAG-GGCUGCGG--CCGGC-GCg -5'
9060 5' -60.9 NC_002512.2 + 68176 0.76 0.32162
Target:  5'- -----aCGaUCCCGuCGCCGGCCGCGUc -3'
miRNA:   3'- gugcaaGC-AGGGCuGCGGCCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 70668 0.68 0.73767
Target:  5'- aCAUGgcCGggaggggacuUCCCGGgGaCCGGCCGgGCg -3'
miRNA:   3'- -GUGCaaGC----------AGGGCUgC-GGCCGGCgCG- -5'
9060 5' -60.9 NC_002512.2 + 70734 0.7 0.587585
Target:  5'- gACGggagCGcgCCCGGcCGCCucacuuggagcGGCCGCGCu -3'
miRNA:   3'- gUGCaa--GCa-GGGCU-GCGG-----------CCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 73350 0.73 0.452054
Target:  5'- uCGCGUacaCGuUCCCGcCGCCGGacccCCGCGCc -3'
miRNA:   3'- -GUGCAa--GC-AGGGCuGCGGCC----GGCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.