miRNA display CGI


Results 81 - 100 of 393 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9060 5' -60.9 NC_002512.2 + 73699 0.66 0.806946
Target:  5'- gACGa-CGUCCaUGACcaugaGCUGGUCGCGCu -3'
miRNA:   3'- gUGCaaGCAGG-GCUG-----CGGCCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 73982 0.69 0.644402
Target:  5'- aCGCGUcggcgccggacUCGUCCCcGCGCCcGCCGuCGg -3'
miRNA:   3'- -GUGCA-----------AGCAGGGcUGCGGcCGGC-GCg -5'
9060 5' -60.9 NC_002512.2 + 74221 0.67 0.781796
Target:  5'- uCGCG---GUCCCGACGCggggcgaaCGGCCGgaCGCc -3'
miRNA:   3'- -GUGCaagCAGGGCUGCG--------GCCGGC--GCG- -5'
9060 5' -60.9 NC_002512.2 + 74577 0.66 0.846055
Target:  5'- gGCGagaUCGUCCuCGGCcauggucaCGGCCGaCGCg -3'
miRNA:   3'- gUGCa--AGCAGG-GCUGcg------GCCGGC-GCG- -5'
9060 5' -60.9 NC_002512.2 + 75221 0.69 0.644402
Target:  5'- gACGgUCG-CCCGACGUCGGaCgGuCGCu -3'
miRNA:   3'- gUGCaAGCaGGGCUGCGGCC-GgC-GCG- -5'
9060 5' -60.9 NC_002512.2 + 75256 0.68 0.73767
Target:  5'- cCGCGUccCGUCCCcacgauggcggcGACGgCGGCgGCGg -3'
miRNA:   3'- -GUGCAa-GCAGGG------------CUGCgGCCGgCGCg -5'
9060 5' -60.9 NC_002512.2 + 75607 0.68 0.718495
Target:  5'- uCGCGcgCGUCUgcgcacgCGcACGCgGGCaCGCGCa -3'
miRNA:   3'- -GUGCaaGCAGG-------GC-UGCGgCCG-GCGCG- -5'
9060 5' -60.9 NC_002512.2 + 75645 0.69 0.69157
Target:  5'- -cCGUggagaaCCUGAuacguuucCGCCGGCCGCGCg -3'
miRNA:   3'- guGCAagca--GGGCU--------GCGGCCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 76506 0.68 0.73767
Target:  5'- cCACG-UCGcUCCgGAcCGCCaGCCGcCGCc -3'
miRNA:   3'- -GUGCaAGC-AGGgCU-GCGGcCGGC-GCG- -5'
9060 5' -60.9 NC_002512.2 + 77691 0.66 0.826192
Target:  5'- aCACG-UCGUCCgGACGCgGucaagugaacgagacGCCGCcCa -3'
miRNA:   3'- -GUGCaAGCAGGgCUGCGgC---------------CGGCGcG- -5'
9060 5' -60.9 NC_002512.2 + 77827 0.67 0.79869
Target:  5'- gUACGUg---CUCGACGCCGGgCG-GCa -3'
miRNA:   3'- -GUGCAagcaGGGCUGCGGCCgGCgCG- -5'
9060 5' -60.9 NC_002512.2 + 78276 0.68 0.719415
Target:  5'- gACGUUguUCuCCGACGCgCGGaCCGUGUc -3'
miRNA:   3'- gUGCAAgcAG-GGCUGCG-GCC-GGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 78430 0.66 0.836258
Target:  5'- gCGCGUuuUCGgccggcgCCaucuugagccaacaUGGCGCCGGCCGgacCGCg -3'
miRNA:   3'- -GUGCA--AGCa------GG--------------GCUGCGGCCGGC---GCG- -5'
9060 5' -60.9 NC_002512.2 + 78517 0.7 0.622584
Target:  5'- gCACGUuuUCGgccggcgCCaucuugaggcaacaUGGCGCCGGCCGgGCc -3'
miRNA:   3'- -GUGCA--AGCa------GG--------------GCUGCGGCCGGCgCG- -5'
9060 5' -60.9 NC_002512.2 + 78797 0.66 0.823043
Target:  5'- aCACGUgcaCGUCuCCGGCGC-GGaCCGagacCGCa -3'
miRNA:   3'- -GUGCAa--GCAG-GGCUGCGgCC-GGC----GCG- -5'
9060 5' -60.9 NC_002512.2 + 79566 0.69 0.653879
Target:  5'- cCGCGg-CGUCCuCGcCGCCGGUCuCGCu -3'
miRNA:   3'- -GUGCaaGCAGG-GCuGCGGCCGGcGCG- -5'
9060 5' -60.9 NC_002512.2 + 79803 0.68 0.728579
Target:  5'- -cCGUcuccaUCG-CCCGACGgCGGCgGCGg -3'
miRNA:   3'- guGCA-----AGCaGGGCUGCgGCCGgCGCg -5'
9060 5' -60.9 NC_002512.2 + 81781 0.66 0.806946
Target:  5'- cCGCc-UCGUCUuCGGCGCCGccGCCGcCGCc -3'
miRNA:   3'- -GUGcaAGCAGG-GCUGCGGC--CGGC-GCG- -5'
9060 5' -60.9 NC_002512.2 + 81990 0.69 0.682194
Target:  5'- gGCGggggCGUCUCGGgGgCGGUCGCGg -3'
miRNA:   3'- gUGCaa--GCAGGGCUgCgGCCGGCGCg -5'
9060 5' -60.9 NC_002512.2 + 82016 0.67 0.755609
Target:  5'- gGCGagccgUCG-CCCGggucggggucGCGCCGGCgGCGg -3'
miRNA:   3'- gUGCa----AGCaGGGC----------UGCGGCCGgCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.