miRNA display CGI


Results 101 - 120 of 393 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9060 5' -60.9 NC_002512.2 + 82091 0.66 0.8534
Target:  5'- cCACGggCGcgcguaagcuuuUUCCGAgcCGCgagucgggaCGGCCGCGCu -3'
miRNA:   3'- -GUGCaaGC------------AGGGCU--GCG---------GCCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 82513 0.68 0.746683
Target:  5'- gGCGUgguuucCGguauUCCCG--GUCGGCCGCGCu -3'
miRNA:   3'- gUGCAa-----GC----AGGGCugCGGCCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 82700 0.7 0.597019
Target:  5'- gGCGUcCGUgCgCGGCGCgGGCcCGCGUu -3'
miRNA:   3'- gUGCAaGCAgG-GCUGCGgCCG-GCGCG- -5'
9060 5' -60.9 NC_002512.2 + 82834 0.66 0.815066
Target:  5'- aACGU---UCCCGcC-CCGGuCCGCGCg -3'
miRNA:   3'- gUGCAagcAGGGCuGcGGCC-GGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 83183 0.68 0.710188
Target:  5'- cCGCcgUCGUCuCCGuCGCCcGuCCGCGCg -3'
miRNA:   3'- -GUGcaAGCAG-GGCuGCGGcC-GGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 83695 0.7 0.597019
Target:  5'- gACGgucgUCGagCCCagGGCGaCCGuGCCGCGCg -3'
miRNA:   3'- gUGCa---AGCa-GGG--CUGC-GGC-CGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 83922 0.7 0.587585
Target:  5'- gGCGUccagcagCG-CCCGGCGCauGUCGCGCa -3'
miRNA:   3'- gUGCAa------GCaGGGCUGCGgcCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 83975 0.74 0.418773
Target:  5'- gGCGgaUG-CCCGGCGCggggCGGUCGCGCa -3'
miRNA:   3'- gUGCaaGCaGGGCUGCG----GCCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 84127 0.72 0.477064
Target:  5'- aGCGUcucggugagguccUCGUCCgaGAgCGCgUGGCCGCGCg -3'
miRNA:   3'- gUGCA-------------AGCAGGg-CU-GCG-GCCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 84317 0.66 0.81426
Target:  5'- uGCGgcgCGUCgCG-CGCCGcagcgucGCCGCGUc -3'
miRNA:   3'- gUGCaa-GCAGgGCuGCGGC-------CGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 84530 0.67 0.790304
Target:  5'- aGCccUCGUagCCGGCGUCgGGCgGCGCg -3'
miRNA:   3'- gUGcaAGCAg-GGCUGCGG-CCGgCGCG- -5'
9060 5' -60.9 NC_002512.2 + 84677 0.66 0.806946
Target:  5'- aCugGUccUCGUCCCGcaGC-CCGGggucgaacuCCGUGCg -3'
miRNA:   3'- -GugCA--AGCAGGGC--UGcGGCC---------GGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 87805 0.7 0.62543
Target:  5'- cCGCGUUCGguugcaccCCCaGCGaucccCCGGCCGgGCg -3'
miRNA:   3'- -GUGCAAGCa-------GGGcUGC-----GGCCGGCgCG- -5'
9060 5' -60.9 NC_002512.2 + 87853 0.68 0.728579
Target:  5'- uCGCGgcggGUCgCCGGCccCCGGCCGCGg -3'
miRNA:   3'- -GUGCaag-CAG-GGCUGc-GGCCGGCGCg -5'
9060 5' -60.9 NC_002512.2 + 87986 0.66 0.843819
Target:  5'- cCGCGg-CGcCCCGACG-CGGagauuuauauagacCCGCGCg -3'
miRNA:   3'- -GUGCaaGCaGGGCUGCgGCC--------------GGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 88149 0.66 0.8534
Target:  5'- gACGaucCG-CCCGugGCCG-UCGUGCg -3'
miRNA:   3'- gUGCaa-GCaGGGCugCGGCcGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 88582 0.68 0.727665
Target:  5'- gACGUcgUCGUCgCCGccggugccgccguGCGCgCGGCCgGCGUc -3'
miRNA:   3'- gUGCA--AGCAG-GGC-------------UGCG-GCCGG-CGCG- -5'
9060 5' -60.9 NC_002512.2 + 88666 0.67 0.790304
Target:  5'- aGCGgggacCG-CCCGAaccCGCCccGGCUGCGCu -3'
miRNA:   3'- gUGCaa---GCaGGGCU---GCGG--CCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 88959 0.68 0.719415
Target:  5'- -uCGUcgcCGUCCCGA-GCC-GCCGCGUc -3'
miRNA:   3'- guGCAa--GCAGGGCUgCGGcCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 89364 0.73 0.43523
Target:  5'- gGCGgcCGUCCUGGCGCCGuaCGUGg -3'
miRNA:   3'- gUGCaaGCAGGGCUGCGGCcgGCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.