miRNA display CGI


Results 121 - 140 of 393 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9060 5' -60.9 NC_002512.2 + 90069 0.66 0.806946
Target:  5'- cCACGUccUUGgacaCCCGAccgaggccccCGCCGGCCuggaggguGCGCc -3'
miRNA:   3'- -GUGCA--AGCa---GGGCU----------GCGGCCGG--------CGCG- -5'
9060 5' -60.9 NC_002512.2 + 90121 0.68 0.710188
Target:  5'- uCGCGggCG-CCCGguGCGCgagGGCCGCGg -3'
miRNA:   3'- -GUGCaaGCaGGGC--UGCGg--CCGGCGCg -5'
9060 5' -60.9 NC_002512.2 + 90387 0.8 0.184249
Target:  5'- gCACGcUCGaggucuUgCCGGCGCCGGCCGUGCc -3'
miRNA:   3'- -GUGCaAGC------AgGGCUGCGGCCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 90499 0.68 0.746683
Target:  5'- gACGggaUCGgggCCGAgGCCGGCgGCGg -3'
miRNA:   3'- gUGCa--AGCag-GGCUgCGGCCGgCGCg -5'
9060 5' -60.9 NC_002512.2 + 90634 0.77 0.276716
Target:  5'- gGCGgcgCGaCCCGGCGCCgcGGCCGCGg -3'
miRNA:   3'- gUGCaa-GCaGGGCUGCGG--CCGGCGCg -5'
9060 5' -60.9 NC_002512.2 + 90924 0.66 0.8534
Target:  5'- cCGCGaaCGgggCCGGCG-CGGCCGcCGCc -3'
miRNA:   3'- -GUGCaaGCag-GGCUGCgGCCGGC-GCG- -5'
9060 5' -60.9 NC_002512.2 + 91885 0.68 0.700904
Target:  5'- gCGCGggCGgcggCgCGGCGCaCGGCC-CGCu -3'
miRNA:   3'- -GUGCaaGCa---GgGCUGCG-GCCGGcGCG- -5'
9060 5' -60.9 NC_002512.2 + 91989 0.71 0.559472
Target:  5'- cCGCGUcCGggucUCCCGcguCGCCGGCgGCGg -3'
miRNA:   3'- -GUGCAaGC----AGGGCu--GCGGCCGgCGCg -5'
9060 5' -60.9 NC_002512.2 + 92081 0.67 0.764441
Target:  5'- gACGgaCGgccgCCgGACGCgCGGCC-CGCc -3'
miRNA:   3'- gUGCaaGCa---GGgCUGCG-GCCGGcGCG- -5'
9060 5' -60.9 NC_002512.2 + 92159 0.7 0.62543
Target:  5'- gACGcUCGUCCCuggagaACGCCGGCCaUGUc -3'
miRNA:   3'- gUGCaAGCAGGGc-----UGCGGCCGGcGCG- -5'
9060 5' -60.9 NC_002512.2 + 92223 0.66 0.815066
Target:  5'- uCGCaGUUCGUgCCCGACGaCCGGgacucggacgaCCG-GCu -3'
miRNA:   3'- -GUG-CAAGCA-GGGCUGC-GGCC-----------GGCgCG- -5'
9060 5' -60.9 NC_002512.2 + 92564 0.66 0.846055
Target:  5'- gACG-UCGgaggCgCCGACGCCgcGGCCGgGa -3'
miRNA:   3'- gUGCaAGCa---G-GGCUGCGG--CCGGCgCg -5'
9060 5' -60.9 NC_002512.2 + 92597 0.78 0.226516
Target:  5'- gGCGgcgGUCCCGAgGCCGGUCGCGa -3'
miRNA:   3'- gUGCaagCAGGGCUgCGGCCGGCGCg -5'
9060 5' -60.9 NC_002512.2 + 92628 0.71 0.540937
Target:  5'- gACGgaCGgcggcCgCCGGCGCCGGgacCCGCGCg -3'
miRNA:   3'- gUGCaaGCa----G-GGCUGCGGCC---GGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 92670 0.74 0.418773
Target:  5'- gACGgcCG-CCCG-CGCCGGgCGCGCc -3'
miRNA:   3'- gUGCaaGCaGGGCuGCGGCCgGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 93362 0.66 0.852673
Target:  5'- aGCGUgcaGUCCCGGgaggggaucgggcCGCaGGgCGCGCc -3'
miRNA:   3'- gUGCAag-CAGGGCU-------------GCGgCCgGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 93696 0.72 0.477939
Target:  5'- gGCGUcgacgCGaUCCCGGCGaCCccGCCGCGCg -3'
miRNA:   3'- gUGCAa----GC-AGGGCUGC-GGc-CGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 94407 0.69 0.69157
Target:  5'- gACGgcgGUCuuGGCGCuccaguCGGCCGCGUc -3'
miRNA:   3'- gUGCaagCAGggCUGCG------GCCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 94813 0.68 0.745785
Target:  5'- aCGCGgggggagcCGUCCCGGagcCGCCggaggaagagcguGGCCGCGg -3'
miRNA:   3'- -GUGCaa------GCAGGGCU---GCGG-------------CCGGCGCg -5'
9060 5' -60.9 NC_002512.2 + 95205 0.66 0.852673
Target:  5'- gGCGagCG-CCCGcuggugacggaucGCGUCGGCCcCGCa -3'
miRNA:   3'- gUGCaaGCaGGGC-------------UGCGGCCGGcGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.