miRNA display CGI


Results 41 - 60 of 393 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9060 5' -60.9 NC_002512.2 + 205587 0.66 0.838543
Target:  5'- aCGCaGUUCGcCCCGcCGCUGucCCGCGg -3'
miRNA:   3'- -GUG-CAAGCaGGGCuGCGGCc-GGCGCg -5'
9060 5' -60.9 NC_002512.2 + 205037 0.66 0.815066
Target:  5'- cCGCGUcCGcCgCCGA--CCGGCCGCGg -3'
miRNA:   3'- -GUGCAaGCaG-GGCUgcGGCCGGCGCg -5'
9060 5' -60.9 NC_002512.2 + 203148 0.68 0.719415
Target:  5'- -cCGUggCGUaCagCGGCGCCGGCgaCGCGCa -3'
miRNA:   3'- guGCAa-GCA-Gg-GCUGCGGCCG--GCGCG- -5'
9060 5' -60.9 NC_002512.2 + 202158 0.66 0.846055
Target:  5'- gGCGgguggUCGuUCCCGugGUCGuGacgggagaaCGCGCg -3'
miRNA:   3'- gUGCa----AGC-AGGGCugCGGC-Cg--------GCGCG- -5'
9060 5' -60.9 NC_002512.2 + 202112 0.66 0.806946
Target:  5'- cCGCGUccUCGUCagcuggUGGCGCCggucucGGCCGcCGCc -3'
miRNA:   3'- -GUGCA--AGCAGg-----GCUGCGG------CCGGC-GCG- -5'
9060 5' -60.9 NC_002512.2 + 199602 0.7 0.615947
Target:  5'- aCGCGggggccUCcUCCaUGGCGCCGGCucCGCGCg -3'
miRNA:   3'- -GUGCa-----AGcAGG-GCUGCGGCCG--GCGCG- -5'
9060 5' -60.9 NC_002512.2 + 198206 0.68 0.73767
Target:  5'- cCGCGUccUCcucCCCGucCGCCaccacGGCCGCGCc -3'
miRNA:   3'- -GUGCA--AGca-GGGCu-GCGG-----CCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 198155 0.71 0.550181
Target:  5'- gCGCGggcCGggUCGGCGCCGGCCG-GCg -3'
miRNA:   3'- -GUGCaa-GCagGGCUGCGGCCGGCgCG- -5'
9060 5' -60.9 NC_002512.2 + 196735 0.66 0.806946
Target:  5'- aCAUGUUCGUUCCGAguCCGuGUCagGCGCc -3'
miRNA:   3'- -GUGCAAGCAGGGCUgcGGC-CGG--CGCG- -5'
9060 5' -60.9 NC_002512.2 + 196732 0.66 0.823043
Target:  5'- cCGCuucgUCGUCCUGuacggcuCGaCCGGCgGCGUg -3'
miRNA:   3'- -GUGca--AGCAGGGCu------GC-GGCCGgCGCG- -5'
9060 5' -60.9 NC_002512.2 + 196626 0.66 0.838543
Target:  5'- --gGUUCG-CCCggGugGCCGacGCCGUGUg -3'
miRNA:   3'- gugCAAGCaGGG--CugCGGC--CGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 196429 0.66 0.815066
Target:  5'- gAUGUUCGUCCC-ACGaCCGGagauCGCa- -3'
miRNA:   3'- gUGCAAGCAGGGcUGC-GGCCg---GCGcg -5'
9060 5' -60.9 NC_002512.2 + 195337 0.7 0.597019
Target:  5'- aCAUGUgCGUgaCCCGGCGCCGGgaaccCCGgGUg -3'
miRNA:   3'- -GUGCAaGCA--GGGCUGCGGCC-----GGCgCG- -5'
9060 5' -60.9 NC_002512.2 + 193141 0.66 0.823043
Target:  5'- uCACGgUCGUCCuCGuC-CUGGCCgGCGUc -3'
miRNA:   3'- -GUGCaAGCAGG-GCuGcGGCCGG-CGCG- -5'
9060 5' -60.9 NC_002512.2 + 192587 0.71 0.540937
Target:  5'- aGCGgacCGUCCCGcUGCugCGGCgCGCGCg -3'
miRNA:   3'- gUGCaa-GCAGGGCuGCG--GCCG-GCGCG- -5'
9060 5' -60.9 NC_002512.2 + 191737 0.66 0.806946
Target:  5'- cCGCGUcggUCGgggugUCCGugGCCGuccucGUCGUGCu -3'
miRNA:   3'- -GUGCA---AGCa----GGGCugCGGC-----CGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 191667 0.73 0.451205
Target:  5'- gACGUccgCGUCCCGgggcuggGCGaCCGGaCCGUGCu -3'
miRNA:   3'- gUGCAa--GCAGGGC-------UGC-GGCC-GGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 191052 0.78 0.226004
Target:  5'- gCACGUggaccggUCGcgCCUGGCGCUGGCUGUGCg -3'
miRNA:   3'- -GUGCA-------AGCa-GGGCUGCGGCCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 190956 0.67 0.773173
Target:  5'- aCGCGggCG-CCCGccGCGgCGGCCccuccgGCGCc -3'
miRNA:   3'- -GUGCaaGCaGGGC--UGCgGCCGG------CGCG- -5'
9060 5' -60.9 NC_002512.2 + 190187 0.67 0.755609
Target:  5'- -cCGcUCGcCCCGGCugcagaagGUCGGCgGCGCg -3'
miRNA:   3'- guGCaAGCaGGGCUG--------CGGCCGgCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.