miRNA display CGI


Results 61 - 80 of 393 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9060 5' -60.9 NC_002512.2 + 190057 0.72 0.486729
Target:  5'- uCAUGUUCaUCCaCGA-GCUGGCCGCGg -3'
miRNA:   3'- -GUGCAAGcAGG-GCUgCGGCCGGCGCg -5'
9060 5' -60.9 NC_002512.2 + 189606 0.67 0.781796
Target:  5'- gACGUUCGUgC--GCGgCGGCCGCacGCg -3'
miRNA:   3'- gUGCAAGCAgGgcUGCgGCCGGCG--CG- -5'
9060 5' -60.9 NC_002512.2 + 189043 0.67 0.764441
Target:  5'- -uCGUUCGguaaugUCCuCGGagcgGCCGGCgGCGCu -3'
miRNA:   3'- guGCAAGC------AGG-GCUg---CGGCCGgCGCG- -5'
9060 5' -60.9 NC_002512.2 + 188630 0.67 0.790304
Target:  5'- aGCGcUCGggCCGcaaggGCGCCGGCgGCGg -3'
miRNA:   3'- gUGCaAGCagGGC-----UGCGGCCGgCGCg -5'
9060 5' -60.9 NC_002512.2 + 187548 0.66 0.823043
Target:  5'- cCugGUcCGUCUCGAucUGUCcGUCGCGCg -3'
miRNA:   3'- -GugCAaGCAGGGCU--GCGGcCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 187388 0.67 0.755609
Target:  5'- uUACGUUC-UCUgGAUGUgGGCCGCuGUa -3'
miRNA:   3'- -GUGCAAGcAGGgCUGCGgCCGGCG-CG- -5'
9060 5' -60.9 NC_002512.2 + 186293 0.67 0.764441
Target:  5'- cCGCGUccUCGUCCgCGACGCCguGGUCaucgGCa -3'
miRNA:   3'- -GUGCA--AGCAGG-GCUGCGG--CCGGcg--CG- -5'
9060 5' -60.9 NC_002512.2 + 184805 0.69 0.644402
Target:  5'- cCGCGgggaGaCCCuuccGCGCCGGCCGCGa -3'
miRNA:   3'- -GUGCaag-CaGGGc---UGCGGCCGGCGCg -5'
9060 5' -60.9 NC_002512.2 + 184682 0.66 0.838543
Target:  5'- gGCGgcCGUCCgCGcCGCCGGUCcCGg -3'
miRNA:   3'- gUGCaaGCAGG-GCuGCGGCCGGcGCg -5'
9060 5' -60.9 NC_002512.2 + 184515 0.67 0.75472
Target:  5'- cCGCGUccUCGUCgCaGCagucgcggggucaGCCGGCgGCGCg -3'
miRNA:   3'- -GUGCA--AGCAGgGcUG-------------CGGCCGgCGCG- -5'
9060 5' -60.9 NC_002512.2 + 182596 0.71 0.572551
Target:  5'- cCGCGaUCG-CCCGGCaGUuccgcagcggcucggUGGCCGCGCg -3'
miRNA:   3'- -GUGCaAGCaGGGCUG-CG---------------GCCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 181637 0.7 0.615947
Target:  5'- gAUG-UCGUCCCacuUGuuGGCCGCGUc -3'
miRNA:   3'- gUGCaAGCAGGGcu-GCggCCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 180878 0.67 0.755609
Target:  5'- cCGCGUUCGUCaCGAacCGCaGGCCGUc- -3'
miRNA:   3'- -GUGCAAGCAGgGCU--GCGgCCGGCGcg -5'
9060 5' -60.9 NC_002512.2 + 180411 0.7 0.633968
Target:  5'- uCGCGUagucgaagUCGUCCucggugaCGGCGCCccgGGCgGCGCc -3'
miRNA:   3'- -GUGCA--------AGCAGG-------GCUGCGG---CCGgCGCG- -5'
9060 5' -60.9 NC_002512.2 + 180202 0.67 0.773173
Target:  5'- aGCaGUUCGacaugCaCUGGCuGCCGGCCcGCGCc -3'
miRNA:   3'- gUG-CAAGCa----G-GGCUG-CGGCCGG-CGCG- -5'
9060 5' -60.9 NC_002512.2 + 179438 0.66 0.846055
Target:  5'- uCGCGgccggCGUCuucuggacauCCGGCGCCGGCCu--- -3'
miRNA:   3'- -GUGCaa---GCAG----------GGCUGCGGCCGGcgcg -5'
9060 5' -60.9 NC_002512.2 + 178685 0.69 0.69157
Target:  5'- aCACGUcCGaggCCCGcaGCG-CGGCCGcCGCg -3'
miRNA:   3'- -GUGCAaGCa--GGGC--UGCgGCCGGC-GCG- -5'
9060 5' -60.9 NC_002512.2 + 177562 0.66 0.8534
Target:  5'- uCugGUUCGgggCCGuCGCCaGGauGCGCg -3'
miRNA:   3'- -GugCAAGCag-GGCuGCGG-CCggCGCG- -5'
9060 5' -60.9 NC_002512.2 + 172831 0.69 0.644402
Target:  5'- -cCGUUCG-CCCGGCGCCccccGGUCGUcggacGCg -3'
miRNA:   3'- guGCAAGCaGGGCUGCGG----CCGGCG-----CG- -5'
9060 5' -60.9 NC_002512.2 + 171918 0.7 0.606475
Target:  5'- aUAgGUUCGUCgCCcucuucgccCGCCGcGCCGCGCc -3'
miRNA:   3'- -GUgCAAGCAG-GGcu-------GCGGC-CGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.