miRNA display CGI


Results 81 - 100 of 393 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9060 5' -60.9 NC_002512.2 + 171795 0.67 0.79869
Target:  5'- uCACc-UCGUCCCGACGgCG--CGCGCu -3'
miRNA:   3'- -GUGcaAGCAGGGCUGCgGCcgGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 170918 0.73 0.460599
Target:  5'- uGCGcUUCGagCCGAUGCU-GCCGCGCg -3'
miRNA:   3'- gUGC-AAGCagGGCUGCGGcCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 169539 0.71 0.578179
Target:  5'- aACGg--GUCCCGGCuGcCCGGCgGCGUg -3'
miRNA:   3'- gUGCaagCAGGGCUG-C-GGCCGgCGCG- -5'
9060 5' -60.9 NC_002512.2 + 169116 0.69 0.685949
Target:  5'- gGCGUUCGguccggucgucgcgcUCCuCGucCGcCCGGCCGcCGCg -3'
miRNA:   3'- gUGCAAGC---------------AGG-GCu-GC-GGCCGGC-GCG- -5'
9060 5' -60.9 NC_002512.2 + 169027 0.74 0.410688
Target:  5'- gGCGggCGUCCgcgagCGGCGCCGGCaucuccucggGCGCg -3'
miRNA:   3'- gUGCaaGCAGG-----GCUGCGGCCGg---------CGCG- -5'
9060 5' -60.9 NC_002512.2 + 165933 0.67 0.773173
Target:  5'- gCAUGUgUCGggucuaCCagaagGACGCCGGCCGCu- -3'
miRNA:   3'- -GUGCA-AGCa-----GGg----CUGCGGCCGGCGcg -5'
9060 5' -60.9 NC_002512.2 + 160802 0.66 0.834727
Target:  5'- cCACGgcagcaguaccagcCGcCCCGGCaccagcaggcgggcgGCCGGCgGCGCu -3'
miRNA:   3'- -GUGCaa------------GCaGGGCUG---------------CGGCCGgCGCG- -5'
9060 5' -60.9 NC_002512.2 + 160765 0.66 0.806946
Target:  5'- gCACGgagGUCCCGGaGCgGgGCCgGCGCa -3'
miRNA:   3'- -GUGCaagCAGGGCUgCGgC-CGG-CGCG- -5'
9060 5' -60.9 NC_002512.2 + 159136 0.67 0.79869
Target:  5'- gCGCGgcCGcUCCaagugaGGCgGCCGGgCGCGCu -3'
miRNA:   3'- -GUGCaaGC-AGGg-----CUG-CGGCCgGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 159045 0.68 0.73767
Target:  5'- cCGCGgucaucUCGUCCCGGgGCgaggCGGacgaCGCGCc -3'
miRNA:   3'- -GUGCa-----AGCAGGGCUgCG----GCCg---GCGCG- -5'
9060 5' -60.9 NC_002512.2 + 158996 0.69 0.663341
Target:  5'- gGCGgaggCGgcggcCCCGGCGuCCGcGCCGgGCg -3'
miRNA:   3'- gUGCaa--GCa----GGGCUGC-GGC-CGGCgCG- -5'
9060 5' -60.9 NC_002512.2 + 158892 0.66 0.806946
Target:  5'- -cCGUccuUCGUCCCGuCcUCGGUCGCGg -3'
miRNA:   3'- guGCA---AGCAGGGCuGcGGCCGGCGCg -5'
9060 5' -60.9 NC_002512.2 + 158860 0.69 0.672781
Target:  5'- gACG-UCGUCgUCGACcgGCCGGCgGCGg -3'
miRNA:   3'- gUGCaAGCAG-GGCUG--CGGCCGgCGCg -5'
9060 5' -60.9 NC_002512.2 + 158314 0.67 0.755609
Target:  5'- cCGCGgUCGU-CCGGCGCgaGuCCGCGCu -3'
miRNA:   3'- -GUGCaAGCAgGGCUGCGg-CcGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 157062 0.7 0.634917
Target:  5'- gGCGggCGUCCCGGgGuCCGgggucGCCgGCGCc -3'
miRNA:   3'- gUGCaaGCAGGGCUgC-GGC-----CGG-CGCG- -5'
9060 5' -60.9 NC_002512.2 + 156528 0.66 0.846055
Target:  5'- cCAUGUgu-UCCugCGACGCCGGUucggaGCGCg -3'
miRNA:   3'- -GUGCAagcAGG--GCUGCGGCCGg----CGCG- -5'
9060 5' -60.9 NC_002512.2 + 156196 0.68 0.710188
Target:  5'- cCugG-UCGUCCCGAaagcgaUGCCG-CaCGCGCu -3'
miRNA:   3'- -GugCaAGCAGGGCU------GCGGCcG-GCGCG- -5'
9060 5' -60.9 NC_002512.2 + 155876 0.76 0.314885
Target:  5'- aCGCuGUUCGUcCCCGACGgCGGgCGCGg -3'
miRNA:   3'- -GUG-CAAGCA-GGGCUGCgGCCgGCGCg -5'
9060 5' -60.9 NC_002512.2 + 155664 0.69 0.653879
Target:  5'- -cCGUUCGcCCCG-CGUCGGgaCCGCGg -3'
miRNA:   3'- guGCAAGCaGGGCuGCGGCC--GGCGCg -5'
9060 5' -60.9 NC_002512.2 + 155616 0.66 0.830871
Target:  5'- gACGUgCGgcgCCUGugcgaggagaGCCGGCgGCGCu -3'
miRNA:   3'- gUGCAaGCa--GGGCug--------CGGCCGgCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.