miRNA display CGI


Results 101 - 120 of 393 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9060 5' -60.9 NC_002512.2 + 155238 0.66 0.8534
Target:  5'- cCGCGgcCGUCCCGcccgucgcgGCGUcgaCGGCuCGCGg -3'
miRNA:   3'- -GUGCaaGCAGGGC---------UGCG---GCCG-GCGCg -5'
9060 5' -60.9 NC_002512.2 + 154926 0.66 0.821459
Target:  5'- aACGUgggcggaccgcucUCGUCCCGuCGCucucccgCGGuCCGCGa -3'
miRNA:   3'- gUGCA-------------AGCAGGGCuGCG-------GCC-GGCGCg -5'
9060 5' -60.9 NC_002512.2 + 154697 0.7 0.606475
Target:  5'- aGCGgcCGU-CCGGCGUCGaGCgGCGCg -3'
miRNA:   3'- gUGCaaGCAgGGCUGCGGC-CGgCGCG- -5'
9060 5' -60.9 NC_002512.2 + 154599 0.7 0.634917
Target:  5'- gGCGgcaUCGUCgCCGcCGCCGccGCCGuCGCc -3'
miRNA:   3'- gUGCa--AGCAG-GGCuGCGGC--CGGC-GCG- -5'
9060 5' -60.9 NC_002512.2 + 153959 0.69 0.672781
Target:  5'- uCGgGUUCuucgggGUCCggCGGCGCCGGCgGCGg -3'
miRNA:   3'- -GUgCAAG------CAGG--GCUGCGGCCGgCGCg -5'
9060 5' -60.9 NC_002512.2 + 153281 0.67 0.764441
Target:  5'- gGCGgcccCGgacagacgUCCGACGCCGGCguucaucucgaCGCGCc -3'
miRNA:   3'- gUGCaa--GCa-------GGGCUGCGGCCG-----------GCGCG- -5'
9060 5' -60.9 NC_002512.2 + 152360 0.67 0.773173
Target:  5'- gGCGUcUCcgGUCCCGAuCGaCCGGUCGCc- -3'
miRNA:   3'- gUGCA-AG--CAGGGCU-GC-GGCCGGCGcg -5'
9060 5' -60.9 NC_002512.2 + 151444 0.69 0.672781
Target:  5'- cCAUGUUgGcUCaagaUGGCGCCGGCCgaaaacGCGCa -3'
miRNA:   3'- -GUGCAAgC-AGg---GCUGCGGCCGG------CGCG- -5'
9060 5' -60.9 NC_002512.2 + 151079 0.66 0.830871
Target:  5'- uGCGgucUCGgUCCG-CGCCGGagaCGUGCa -3'
miRNA:   3'- gUGCa--AGCaGGGCuGCGGCCg--GCGCG- -5'
9060 5' -60.9 NC_002512.2 + 150815 0.73 0.469228
Target:  5'- uCACGggUCGcCgUGACGaCCGcGCCGCGCu -3'
miRNA:   3'- -GUGCa-AGCaGgGCUGC-GGC-CGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 149873 0.66 0.823043
Target:  5'- gACGccUCGU-CCGGCuCCGGCUGcCGCu -3'
miRNA:   3'- gUGCa-AGCAgGGCUGcGGCCGGC-GCG- -5'
9060 5' -60.9 NC_002512.2 + 149229 0.69 0.663341
Target:  5'- cCGCGggacCGacggaCCCGGCGCCGccGCCGCGg -3'
miRNA:   3'- -GUGCaa--GCa----GGGCUGCGGC--CGGCGCg -5'
9060 5' -60.9 NC_002512.2 + 149060 0.66 0.838543
Target:  5'- cUACGgggccCGcUCcgCCGACGCCGaGgCGCGCg -3'
miRNA:   3'- -GUGCaa---GC-AG--GGCUGCGGC-CgGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 148521 0.66 0.806946
Target:  5'- gGCGgcCGccgCCCGcC-CCGGCCGCGa -3'
miRNA:   3'- gUGCaaGCa--GGGCuGcGGCCGGCGCg -5'
9060 5' -60.9 NC_002512.2 + 148185 0.67 0.79869
Target:  5'- gCAC-UUCGacacccUCCCGGcCGCCGaGCUGCGg -3'
miRNA:   3'- -GUGcAAGC------AGGGCU-GCGGC-CGGCGCg -5'
9060 5' -60.9 NC_002512.2 + 148080 0.73 0.452054
Target:  5'- cCGCGgUCGUCCgucccccggCGGCGgCGGCgGCGCc -3'
miRNA:   3'- -GUGCaAGCAGG---------GCUGCgGCCGgCGCG- -5'
9060 5' -60.9 NC_002512.2 + 147926 0.66 0.815066
Target:  5'- aGCGUuuUCGUCuUCGuCGgCGGCCGC-Cg -3'
miRNA:   3'- gUGCA--AGCAG-GGCuGCgGCCGGCGcG- -5'
9060 5' -60.9 NC_002512.2 + 147769 0.7 0.58476
Target:  5'- gCGCGgcCGUCCCGACuCgCGGCucggaaaaagcuuaCGCGCg -3'
miRNA:   3'- -GUGCaaGCAGGGCUGcG-GCCG--------------GCGCG- -5'
9060 5' -60.9 NC_002512.2 + 147499 0.7 0.615947
Target:  5'- cCGCGcgCGgagCCac-CGCCGGCCGCaGCa -3'
miRNA:   3'- -GUGCaaGCa--GGgcuGCGGCCGGCG-CG- -5'
9060 5' -60.9 NC_002512.2 + 147345 0.68 0.746683
Target:  5'- gCACcUUCGUCCCGGacagaGCgCGGCCGa-- -3'
miRNA:   3'- -GUGcAAGCAGGGCUg----CG-GCCGGCgcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.