Results 41 - 60 of 393 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9060 | 5' | -60.9 | NC_002512.2 | + | 130749 | 0.77 | 0.289013 |
Target: 5'- -cCGUUCc-CCCGACGauCCGGCCGUGCg -3' miRNA: 3'- guGCAAGcaGGGCUGC--GGCCGGCGCG- -5' |
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9060 | 5' | -60.9 | NC_002512.2 | + | 5079 | 0.77 | 0.282812 |
Target: 5'- gGCGUuggucgUCGUCgCCGGCGUCGGCgCGgGCg -3' miRNA: 3'- gUGCA------AGCAG-GGCUGCGGCCG-GCgCG- -5' |
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9060 | 5' | -60.9 | NC_002512.2 | + | 29890 | 0.77 | 0.252819 |
Target: 5'- gCACGUgggccgcUCGUCCC--CGCCGGgCGCGCg -3' miRNA: 3'- -GUGCA-------AGCAGGGcuGCGGCCgGCGCG- -5' |
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9060 | 5' | -60.9 | NC_002512.2 | + | 50445 | 0.78 | 0.247806 |
Target: 5'- -cCGgaUGUCCagaaGACGCCGGCCGCGa -3' miRNA: 3'- guGCaaGCAGGg---CUGCGGCCGGCGCg -5' |
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9060 | 5' | -60.9 | NC_002512.2 | + | 2202 | 0.79 | 0.216463 |
Target: 5'- -cCGUcgUCGUCUCGGuCGCCGGCgGCGCc -3' miRNA: 3'- guGCA--AGCAGGGCU-GCGGCCGgCGCG- -5' |
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9060 | 5' | -60.9 | NC_002512.2 | + | 45413 | 0.73 | 0.426954 |
Target: 5'- uGCGggCGcUCgacggCGGCGCCGGCCGCGg -3' miRNA: 3'- gUGCaaGC-AGg----GCUGCGGCCGGCGCg -5' |
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9060 | 5' | -60.9 | NC_002512.2 | + | 89364 | 0.73 | 0.43523 |
Target: 5'- gGCGgcCGUCCUGGCGCCGuaCGUGg -3' miRNA: 3'- gUGCaaGCAGGGCUGCGGCcgGCGCg -5' |
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9060 | 5' | -60.9 | NC_002512.2 | + | 33508 | 0.72 | 0.522613 |
Target: 5'- cCGCGg-CGUCCCGAagugaGcCCGGCCG-GCg -3' miRNA: 3'- -GUGCaaGCAGGGCUg----C-GGCCGGCgCG- -5' |
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9060 | 5' | -60.9 | NC_002512.2 | + | 10090 | 0.72 | 0.522613 |
Target: 5'- gCGCGUccccuaucugUGUcCCCGGCcggGCCGGCCGCGg -3' miRNA: 3'- -GUGCAa---------GCA-GGGCUG---CGGCCGGCGCg -5' |
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9060 | 5' | -60.9 | NC_002512.2 | + | 116707 | 0.72 | 0.513541 |
Target: 5'- aGCGgaCGg--CGACGCCGGUCGCGUc -3' miRNA: 3'- gUGCaaGCaggGCUGCGGCCGGCGCG- -5' |
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9060 | 5' | -60.9 | NC_002512.2 | + | 16983 | 0.72 | 0.504533 |
Target: 5'- -cCGUUCcUCCCGGCGCCgacucgguccauGGCCGcCGUc -3' miRNA: 3'- guGCAAGcAGGGCUGCGG------------CCGGC-GCG- -5' |
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9060 | 5' | -60.9 | NC_002512.2 | + | 2637 | 0.72 | 0.486729 |
Target: 5'- -uCGcUCGUCCUGAUGCCcgcccguccGCCGCGCc -3' miRNA: 3'- guGCaAGCAGGGCUGCGGc--------CGGCGCG- -5' |
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9060 | 5' | -60.9 | NC_002512.2 | + | 124803 | 0.72 | 0.486729 |
Target: 5'- aCACG-UCGaCCCGAcCGCCGGCUucuucggcuGCGUg -3' miRNA: 3'- -GUGCaAGCaGGGCU-GCGGCCGG---------CGCG- -5' |
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9060 | 5' | -60.9 | NC_002512.2 | + | 84127 | 0.72 | 0.477064 |
Target: 5'- aGCGUcucggugagguccUCGUCCgaGAgCGCgUGGCCGCGCg -3' miRNA: 3'- gUGCA-------------AGCAGGg-CU-GCG-GCCGGCGCG- -5' |
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9060 | 5' | -60.9 | NC_002512.2 | + | 128453 | 0.73 | 0.469228 |
Target: 5'- gGCG-UCG-CCgCGcCGCCGGCCGcCGCu -3' miRNA: 3'- gUGCaAGCaGG-GCuGCGGCCGGC-GCG- -5' |
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9060 | 5' | -60.9 | NC_002512.2 | + | 103108 | 0.73 | 0.460599 |
Target: 5'- gCGCGgcacgCGUCgCCGcCGCC-GCCGCGCc -3' miRNA: 3'- -GUGCaa---GCAG-GGCuGCGGcCGGCGCG- -5' |
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9060 | 5' | -60.9 | NC_002512.2 | + | 73350 | 0.73 | 0.452054 |
Target: 5'- uCGCGUacaCGuUCCCGcCGCCGGacccCCGCGCc -3' miRNA: 3'- -GUGCAa--GC-AGGGCuGCGGCC----GGCGCG- -5' |
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9060 | 5' | -60.9 | NC_002512.2 | + | 50021 | 0.73 | 0.443597 |
Target: 5'- gCACG-UCGUCgUGACGgUGGgCGCGCa -3' miRNA: 3'- -GUGCaAGCAGgGCUGCgGCCgGCGCG- -5' |
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9060 | 5' | -60.9 | NC_002512.2 | + | 18127 | 0.73 | 0.43523 |
Target: 5'- cCACG-UCcUCCCGcaGCGCCcgGGCCGCGUc -3' miRNA: 3'- -GUGCaAGcAGGGC--UGCGG--CCGGCGCG- -5' |
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9060 | 5' | -60.9 | NC_002512.2 | + | 141745 | 0.73 | 0.43523 |
Target: 5'- cCACGggcggaUCGUCCCcuacaucCGCCGcGCCGUGCa -3' miRNA: 3'- -GUGCa-----AGCAGGGcu-----GCGGC-CGGCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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