miRNA display CGI


Results 61 - 80 of 393 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9060 5' -60.9 NC_002512.2 + 73350 0.73 0.452054
Target:  5'- uCGCGUacaCGuUCCCGcCGCCGGacccCCGCGCc -3'
miRNA:   3'- -GUGCAa--GC-AGGGCuGCGGCC----GGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 103108 0.73 0.460599
Target:  5'- gCGCGgcacgCGUCgCCGcCGCC-GCCGCGCc -3'
miRNA:   3'- -GUGCaa---GCAG-GGCuGCGGcCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 39669 0.71 0.540937
Target:  5'- gACGUggcCGUCCCgGACGaCCGcGCCGC-Cg -3'
miRNA:   3'- gUGCAa--GCAGGG-CUGC-GGC-CGGCGcG- -5'
9060 5' -60.9 NC_002512.2 + 12546 0.71 0.540937
Target:  5'- -uCGUgCGUCCCGAugcCGCCGuaCGUGCu -3'
miRNA:   3'- guGCAaGCAGGGCU---GCGGCcgGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 118681 0.71 0.540937
Target:  5'- -uCGUcUGUCCCGACGUCGgcGCCGUGg -3'
miRNA:   3'- guGCAaGCAGGGCUGCGGC--CGGCGCg -5'
9060 5' -60.9 NC_002512.2 + 22370 0.71 0.550181
Target:  5'- aCGCGgcccCGUCCuCGuCGUCGGUCGCGg -3'
miRNA:   3'- -GUGCaa--GCAGG-GCuGCGGCCGGCGCg -5'
9060 5' -60.9 NC_002512.2 + 111354 0.71 0.550181
Target:  5'- cCGCGUUCGUuuccCCCgGACGCCGGa-GgGCc -3'
miRNA:   3'- -GUGCAAGCA----GGG-CUGCGGCCggCgCG- -5'
9060 5' -60.9 NC_002512.2 + 91989 0.71 0.559472
Target:  5'- cCGCGUcCGggucUCCCGcguCGCCGGCgGCGg -3'
miRNA:   3'- -GUGCAaGC----AGGGCu--GCGGCCGgCGCg -5'
9060 5' -60.9 NC_002512.2 + 8693 0.71 0.567871
Target:  5'- gUACGUacUCGggUCCCGuCcacuccgaggucgGUCGGCCGCGCg -3'
miRNA:   3'- -GUGCA--AGC--AGGGCuG-------------CGGCCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 111261 0.71 0.568806
Target:  5'- aACGUgcacagcaccgUCGUCUCcAUGUCGGCCGcCGCg -3'
miRNA:   3'- gUGCA-----------AGCAGGGcUGCGGCCGGC-GCG- -5'
9060 5' -60.9 NC_002512.2 + 133391 0.71 0.531747
Target:  5'- gGCGgUCG-CCCGgaccauggaggGCGagaCGGCCGCGCg -3'
miRNA:   3'- gUGCaAGCaGGGC-----------UGCg--GCCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 137979 0.71 0.531747
Target:  5'- uGCGUgcCGggCCCGA-GCgGGCCGUGCg -3'
miRNA:   3'- gUGCAa-GCa-GGGCUgCGgCCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 128453 0.73 0.469228
Target:  5'- gGCG-UCG-CCgCGcCGCCGGCCGcCGCu -3'
miRNA:   3'- gUGCaAGCaGG-GCuGCGGCCGGC-GCG- -5'
9060 5' -60.9 NC_002512.2 + 84127 0.72 0.477064
Target:  5'- aGCGUcucggugagguccUCGUCCgaGAgCGCgUGGCCGCGCg -3'
miRNA:   3'- gUGCA-------------AGCAGGg-CU-GCG-GCCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 124803 0.72 0.486729
Target:  5'- aCACG-UCGaCCCGAcCGCCGGCUucuucggcuGCGUg -3'
miRNA:   3'- -GUGCaAGCaGGGCU-GCGGCCGG---------CGCG- -5'
9060 5' -60.9 NC_002512.2 + 2637 0.72 0.486729
Target:  5'- -uCGcUCGUCCUGAUGCCcgcccguccGCCGCGCc -3'
miRNA:   3'- guGCaAGCAGGGCUGCGGc--------CGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 16983 0.72 0.504533
Target:  5'- -cCGUUCcUCCCGGCGCCgacucgguccauGGCCGcCGUc -3'
miRNA:   3'- guGCAAGcAGGGCUGCGG------------CCGGC-GCG- -5'
9060 5' -60.9 NC_002512.2 + 116707 0.72 0.513541
Target:  5'- aGCGgaCGg--CGACGCCGGUCGCGUc -3'
miRNA:   3'- gUGCaaGCaggGCUGCGGCCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 10090 0.72 0.522613
Target:  5'- gCGCGUccccuaucugUGUcCCCGGCcggGCCGGCCGCGg -3'
miRNA:   3'- -GUGCAa---------GCA-GGGCUG---CGGCCGGCGCg -5'
9060 5' -60.9 NC_002512.2 + 33508 0.72 0.522613
Target:  5'- cCGCGg-CGUCCCGAagugaGcCCGGCCG-GCg -3'
miRNA:   3'- -GUGCaaGCAGGGCUg----C-GGCCGGCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.