miRNA display CGI


Results 101 - 120 of 393 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9060 5' -60.9 NC_002512.2 + 60869 0.7 0.62543
Target:  5'- uCGCGgaCGccgCCCGGauCGCCGaGCCgGCGCg -3'
miRNA:   3'- -GUGCaaGCa--GGGCU--GCGGC-CGG-CGCG- -5'
9060 5' -60.9 NC_002512.2 + 3175 0.7 0.634917
Target:  5'- cCGCGgccucccgUCG-CUCGACGCCG-CCGCGg -3'
miRNA:   3'- -GUGCa-------AGCaGGGCUGCGGCcGGCGCg -5'
9060 5' -60.9 NC_002512.2 + 154599 0.7 0.634917
Target:  5'- gGCGgcaUCGUCgCCGcCGCCGccGCCGuCGCc -3'
miRNA:   3'- gUGCa--AGCAG-GGCuGCGGC--CGGC-GCG- -5'
9060 5' -60.9 NC_002512.2 + 129971 0.7 0.634917
Target:  5'- aCGCGaUCGaacaCCGccgggaGCGCCGGCgGCGCc -3'
miRNA:   3'- -GUGCaAGCag--GGC------UGCGGCCGgCGCG- -5'
9060 5' -60.9 NC_002512.2 + 73982 0.69 0.644402
Target:  5'- aCGCGUcggcgccggacUCGUCCCcGCGCCcGCCGuCGg -3'
miRNA:   3'- -GUGCA-----------AGCAGGGcUGCGGcCGGC-GCg -5'
9060 5' -60.9 NC_002512.2 + 82700 0.7 0.597019
Target:  5'- gGCGUcCGUgCgCGGCGCgGGCcCGCGUu -3'
miRNA:   3'- gUGCAaGCAgG-GCUGCGgCCG-GCGCG- -5'
9060 5' -60.9 NC_002512.2 + 118073 0.7 0.587585
Target:  5'- cCGCGgagggggCGgCuCCGGCGCCGGCggcgacCGCGCg -3'
miRNA:   3'- -GUGCaa-----GCaG-GGCUGCGGCCG------GCGCG- -5'
9060 5' -60.9 NC_002512.2 + 39669 0.71 0.540937
Target:  5'- gACGUggcCGUCCCgGACGaCCGcGCCGC-Cg -3'
miRNA:   3'- gUGCAa--GCAGGG-CUGC-GGC-CGGCGcG- -5'
9060 5' -60.9 NC_002512.2 + 12546 0.71 0.540937
Target:  5'- -uCGUgCGUCCCGAugcCGCCGuaCGUGCu -3'
miRNA:   3'- guGCAaGCAGGGCU---GCGGCcgGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 118681 0.71 0.540937
Target:  5'- -uCGUcUGUCCCGACGUCGgcGCCGUGg -3'
miRNA:   3'- guGCAaGCAGGGCUGCGGC--CGGCGCg -5'
9060 5' -60.9 NC_002512.2 + 22370 0.71 0.550181
Target:  5'- aCGCGgcccCGUCCuCGuCGUCGGUCGCGg -3'
miRNA:   3'- -GUGCaa--GCAGG-GCuGCGGCCGGCGCg -5'
9060 5' -60.9 NC_002512.2 + 111354 0.71 0.550181
Target:  5'- cCGCGUUCGUuuccCCCgGACGCCGGa-GgGCc -3'
miRNA:   3'- -GUGCAAGCA----GGG-CUGCGGCCggCgCG- -5'
9060 5' -60.9 NC_002512.2 + 91989 0.71 0.559472
Target:  5'- cCGCGUcCGggucUCCCGcguCGCCGGCgGCGg -3'
miRNA:   3'- -GUGCAaGC----AGGGCu--GCGGCCGgCGCg -5'
9060 5' -60.9 NC_002512.2 + 8693 0.71 0.567871
Target:  5'- gUACGUacUCGggUCCCGuCcacuccgaggucgGUCGGCCGCGCg -3'
miRNA:   3'- -GUGCA--AGC--AGGGCuG-------------CGGCCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 111261 0.71 0.568806
Target:  5'- aACGUgcacagcaccgUCGUCUCcAUGUCGGCCGcCGCg -3'
miRNA:   3'- gUGCA-----------AGCAGGGcUGCGGCCGGC-GCG- -5'
9060 5' -60.9 NC_002512.2 + 130146 0.71 0.568806
Target:  5'- uCGCGgccgCGgggCCCGGCggcggGCCGGCC-CGCg -3'
miRNA:   3'- -GUGCaa--GCa--GGGCUG-----CGGCCGGcGCG- -5'
9060 5' -60.9 NC_002512.2 + 104932 0.71 0.578179
Target:  5'- gACGgccuccUCGUCCggcgucggcgCGGCGCCGGCCuCGUg -3'
miRNA:   3'- gUGCa-----AGCAGG----------GCUGCGGCCGGcGCG- -5'
9060 5' -60.9 NC_002512.2 + 147769 0.7 0.58476
Target:  5'- gCGCGgcCGUCCCGACuCgCGGCucggaaaaagcuuaCGCGCg -3'
miRNA:   3'- -GUGCaaGCAGGGCUGcG-GCCG--------------GCGCG- -5'
9060 5' -60.9 NC_002512.2 + 70734 0.7 0.587585
Target:  5'- gACGggagCGcgCCCGGcCGCCucacuuggagcGGCCGCGCu -3'
miRNA:   3'- gUGCaa--GCa-GGGCU-GCGG-----------CCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 83922 0.7 0.587585
Target:  5'- gGCGUccagcagCG-CCCGGCGCauGUCGCGCa -3'
miRNA:   3'- gUGCAa------GCaGGGCUGCGgcCGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.