miRNA display CGI


Results 41 - 60 of 393 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9060 5' -60.9 NC_002512.2 + 187548 0.66 0.823043
Target:  5'- cCugGUcCGUCUCGAucUGUCcGUCGCGCg -3'
miRNA:   3'- -GugCAaGCAGGGCU--GCGGcCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 224334 0.66 0.838543
Target:  5'- -cUGUUUuUCCgCGGCGCCGcGCCGggguCGCg -3'
miRNA:   3'- guGCAAGcAGG-GCUGCGGC-CGGC----GCG- -5'
9060 5' -60.9 NC_002512.2 + 177562 0.66 0.8534
Target:  5'- uCugGUUCGgggCCGuCGCCaGGauGCGCg -3'
miRNA:   3'- -GugCAAGCag-GGCuGCGG-CCggCGCG- -5'
9060 5' -60.9 NC_002512.2 + 196732 0.66 0.823043
Target:  5'- cCGCuucgUCGUCCUGuacggcuCGaCCGGCgGCGUg -3'
miRNA:   3'- -GUGca--AGCAGGGCu------GC-GGCCGgCGCG- -5'
9060 5' -60.9 NC_002512.2 + 82091 0.66 0.8534
Target:  5'- cCACGggCGcgcguaagcuuuUUCCGAgcCGCgagucgggaCGGCCGCGCu -3'
miRNA:   3'- -GUGCaaGC------------AGGGCU--GCG---------GCCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 171795 0.67 0.79869
Target:  5'- uCACc-UCGUCCCGACGgCG--CGCGCu -3'
miRNA:   3'- -GUGcaAGCAGGGCUGCgGCcgGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 107974 0.66 0.8534
Target:  5'- cCGCc-UCGUCCCGcuCGCUccCCGCGCg -3'
miRNA:   3'- -GUGcaAGCAGGGCu-GCGGccGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 148185 0.67 0.79869
Target:  5'- gCAC-UUCGacacccUCCCGGcCGCCGaGCUGCGg -3'
miRNA:   3'- -GUGcAAGC------AGGGCU-GCGGC-CGGCGCg -5'
9060 5' -60.9 NC_002512.2 + 112842 0.66 0.806946
Target:  5'- aCACGgccgUCaUCUCGGCGaacucCCGGCCGC-Cg -3'
miRNA:   3'- -GUGCa---AGcAGGGCUGC-----GGCCGGCGcG- -5'
9060 5' -60.9 NC_002512.2 + 158892 0.66 0.806946
Target:  5'- -cCGUccuUCGUCCCGuCcUCGGUCGCGg -3'
miRNA:   3'- guGCA---AGCAGGGCuGcGGCCGGCGCg -5'
9060 5' -60.9 NC_002512.2 + 114787 0.66 0.815066
Target:  5'- gCACGg-CGUCCCGACGucCCGGCaGaCGa -3'
miRNA:   3'- -GUGCaaGCAGGGCUGC--GGCCGgC-GCg -5'
9060 5' -60.9 NC_002512.2 + 205037 0.66 0.815066
Target:  5'- cCGCGUcCGcCgCCGA--CCGGCCGCGg -3'
miRNA:   3'- -GUGCAaGCaG-GGCUgcGGCCGGCGCg -5'
9060 5' -60.9 NC_002512.2 + 149873 0.66 0.823043
Target:  5'- gACGccUCGU-CCGGCuCCGGCUGcCGCu -3'
miRNA:   3'- gUGCa-AGCAgGGCUGcGGCCGGC-GCG- -5'
9060 5' -60.9 NC_002512.2 + 105235 0.66 0.830871
Target:  5'- gGCGUacagCgUGAgCGCCGcGCCGCGCa -3'
miRNA:   3'- gUGCAagcaGgGCU-GCGGC-CGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 160802 0.66 0.834727
Target:  5'- cCACGgcagcaguaccagcCGcCCCGGCaccagcaggcgggcgGCCGGCgGCGCu -3'
miRNA:   3'- -GUGCaa------------GCaGGGCUG---------------CGGCCGgCGCG- -5'
9060 5' -60.9 NC_002512.2 + 111498 0.66 0.838543
Target:  5'- gACGgagaGUCCgGAcgucCGCCGGCgguaGCGCc -3'
miRNA:   3'- gUGCaag-CAGGgCU----GCGGCCGg---CGCG- -5'
9060 5' -60.9 NC_002512.2 + 145906 0.66 0.838543
Target:  5'- gCGCGacCGcCCCG-CGCCGGgcauCCGcCGCc -3'
miRNA:   3'- -GUGCaaGCaGGGCuGCGGCC----GGC-GCG- -5'
9060 5' -60.9 NC_002512.2 + 92564 0.66 0.846055
Target:  5'- gACG-UCGgaggCgCCGACGCCgcGGCCGgGa -3'
miRNA:   3'- gUGCaAGCa---G-GGCUGCGG--CCGGCgCg -5'
9060 5' -60.9 NC_002512.2 + 221482 0.66 0.846055
Target:  5'- gCGCGU---UCCUGGCGCuCGGCguccuauuuuccUGCGCg -3'
miRNA:   3'- -GUGCAagcAGGGCUGCG-GCCG------------GCGCG- -5'
9060 5' -60.9 NC_002512.2 + 88149 0.66 0.8534
Target:  5'- gACGaucCG-CCCGugGCCG-UCGUGCg -3'
miRNA:   3'- gUGCaa-GCaGGGCugCGGCcGGCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.