miRNA display CGI


Results 61 - 80 of 393 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9060 5' -60.9 NC_002512.2 + 149873 0.66 0.823043
Target:  5'- gACGccUCGU-CCGGCuCCGGCUGcCGCu -3'
miRNA:   3'- gUGCa-AGCAgGGCUGcGGCCGGC-GCG- -5'
9060 5' -60.9 NC_002512.2 + 92223 0.66 0.815066
Target:  5'- uCGCaGUUCGUgCCCGACGaCCGGgacucggacgaCCG-GCu -3'
miRNA:   3'- -GUG-CAAGCA-GGGCUGC-GGCC-----------GGCgCG- -5'
9060 5' -60.9 NC_002512.2 + 96093 0.66 0.8534
Target:  5'- gCGCGaccgUCGUcCCCGcCGCCG-CCGuCGUc -3'
miRNA:   3'- -GUGCa---AGCA-GGGCuGCGGCcGGC-GCG- -5'
9060 5' -60.9 NC_002512.2 + 95205 0.66 0.852673
Target:  5'- gGCGagCG-CCCGcuggugacggaucGCGUCGGCCcCGCa -3'
miRNA:   3'- gUGCaaGCaGGGC-------------UGCGGCCGGcGCG- -5'
9060 5' -60.9 NC_002512.2 + 202158 0.66 0.846055
Target:  5'- gGCGgguggUCGuUCCCGugGUCGuGacgggagaaCGCGCg -3'
miRNA:   3'- gUGCa----AGC-AGGGCugCGGC-Cg--------GCGCG- -5'
9060 5' -60.9 NC_002512.2 + 123634 0.66 0.846055
Target:  5'- gACGg--GUCCCGgggagagcGCGCCGcgguucCCGCGCg -3'
miRNA:   3'- gUGCaagCAGGGC--------UGCGGCc-----GGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 205587 0.66 0.838543
Target:  5'- aCGCaGUUCGcCCCGcCGCUGucCCGCGg -3'
miRNA:   3'- -GUG-CAAGCaGGGCuGCGGCc-GGCGCg -5'
9060 5' -60.9 NC_002512.2 + 196626 0.66 0.838543
Target:  5'- --gGUUCG-CCCggGugGCCGacGCCGUGUg -3'
miRNA:   3'- gugCAAGCaGGG--CugCGGC--CGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 151079 0.66 0.830871
Target:  5'- uGCGgucUCGgUCCG-CGCCGGagaCGUGCa -3'
miRNA:   3'- gUGCa--AGCaGGGCuGCGGCCg--GCGCG- -5'
9060 5' -60.9 NC_002512.2 + 155616 0.66 0.830871
Target:  5'- gACGUgCGgcgCCUGugcgaggagaGCCGGCgGCGCu -3'
miRNA:   3'- gUGCAaGCa--GGGCug--------CGGCCGgCGCG- -5'
9060 5' -60.9 NC_002512.2 + 189043 0.67 0.764441
Target:  5'- -uCGUUCGguaaugUCCuCGGagcgGCCGGCgGCGCu -3'
miRNA:   3'- guGCAAGC------AGG-GCUg---CGGCCGgCGCG- -5'
9060 5' -60.9 NC_002512.2 + 132494 0.67 0.773173
Target:  5'- cCGCG-UCGUcgcgcccgccCCCGuCuCCGGCCGcCGCg -3'
miRNA:   3'- -GUGCaAGCA----------GGGCuGcGGCCGGC-GCG- -5'
9060 5' -60.9 NC_002512.2 + 191737 0.66 0.806946
Target:  5'- cCGCGUcggUCGgggugUCCGugGCCGuccucGUCGUGCu -3'
miRNA:   3'- -GUGCA---AGCa----GGGCugCGGC-----CGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 90069 0.66 0.806946
Target:  5'- cCACGUccUUGgacaCCCGAccgaggccccCGCCGGCCuggaggguGCGCc -3'
miRNA:   3'- -GUGCA--AGCa---GGGCU----------GCGGCCGG--------CGCG- -5'
9060 5' -60.9 NC_002512.2 + 148185 0.67 0.79869
Target:  5'- gCAC-UUCGacacccUCCCGGcCGCCGaGCUGCGg -3'
miRNA:   3'- -GUGcAAGC------AGGGCU-GCGGC-CGGCGCg -5'
9060 5' -60.9 NC_002512.2 + 171795 0.67 0.79869
Target:  5'- uCACc-UCGUCCCGACGgCG--CGCGCu -3'
miRNA:   3'- -GUGcaAGCAGGGCUGCgGCcgGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 88666 0.67 0.790304
Target:  5'- aGCGgggacCG-CCCGAaccCGCCccGGCUGCGCu -3'
miRNA:   3'- gUGCaa---GCaGGGCU---GCGG--CCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 189606 0.67 0.781796
Target:  5'- gACGUUCGUgC--GCGgCGGCCGCacGCg -3'
miRNA:   3'- gUGCAAGCAgGgcUGCgGCCGGCG--CG- -5'
9060 5' -60.9 NC_002512.2 + 222636 0.67 0.773173
Target:  5'- gACGgaCGccgcuccgCCgCGACgGCCGGCCGgGCc -3'
miRNA:   3'- gUGCaaGCa-------GG-GCUG-CGGCCGGCgCG- -5'
9060 5' -60.9 NC_002512.2 + 190956 0.67 0.773173
Target:  5'- aCGCGggCG-CCCGccGCGgCGGCCccuccgGCGCc -3'
miRNA:   3'- -GUGCaaGCaGGGC--UGCgGCCGG------CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.